Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSQ66_RS16330 Genome accession   NZ_CP048106
Coordinates   3762459..3762926 (-) Length   155 a.a.
NCBI ID   WP_162428441.1    Uniprot ID   -
Organism   Pontibacter pudoricolor strain BT214     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3757459..3767926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSQ66_RS16305 recG 3757463..3759562 (-) 2100 WP_162428437.1 ATP-dependent DNA helicase RecG -
  GSQ66_RS16310 - 3759667..3760140 (-) 474 WP_162428438.1 hypothetical protein -
  GSQ66_RS16315 - 3760187..3760441 (-) 255 WP_162428439.1 hypothetical protein -
  GSQ66_RS16320 gldD 3760491..3761111 (-) 621 WP_162428440.1 gliding motility lipoprotein GldD -
  GSQ66_RS16325 gldE 3761071..3762432 (-) 1362 WP_238395728.1 gliding motility-associated protein GldE -
  GSQ66_RS16330 ssb 3762459..3762926 (-) 468 WP_162428441.1 single-stranded DNA-binding protein Machinery gene
  GSQ66_RS16335 mutY 3763030..3764118 (-) 1089 WP_162428442.1 A/G-specific adenine glycosylase -
  GSQ66_RS16340 - 3764433..3764738 (+) 306 WP_007655567.1 HU family DNA-binding protein -
  GSQ66_RS16345 - 3764802..3765671 (+) 870 WP_162428443.1 lipopolysaccharide assembly protein LapB -
  GSQ66_RS16350 - 3765882..3767477 (+) 1596 WP_162428444.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16651.42 Da        Isoelectric Point: 5.2749

>NTDB_id=419826 GSQ66_RS16330 WP_162428441.1 3762459..3762926(-) (ssb) [Pontibacter pudoricolor strain BT214]
MASVNKVILIGNLGKDPEVRHLEGGVAVARFPLATSETFKDKSGQKQEKTEWHNIVLWRGLAEVAEKYLRKGQSVFIEGK
IRTSQYQDKEGNQRYSTEIVADNMTMLTRGEGGSSEGGNFQGSAATSSAGSNYNAGAATAPAGVAQNDEPDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=419826 GSQ66_RS16330 WP_162428441.1 3762459..3762926(-) (ssb) [Pontibacter pudoricolor strain BT214]
ATGGCAAGTGTAAACAAAGTAATCCTGATCGGAAACCTGGGCAAAGACCCTGAAGTACGTCATTTAGAAGGTGGTGTGGC
TGTAGCCCGCTTCCCTTTAGCAACCTCCGAAACCTTTAAGGATAAAAGCGGTCAAAAACAGGAGAAAACCGAATGGCATA
ACATCGTGTTATGGCGCGGCCTGGCCGAGGTAGCAGAAAAGTATCTGCGCAAAGGTCAGTCTGTTTTTATTGAAGGCAAG
ATCCGAACAAGCCAATACCAGGACAAAGAAGGAAACCAGCGTTACTCTACAGAAATTGTAGCCGATAACATGACCATGTT
AACGCGTGGTGAAGGTGGCTCATCAGAAGGCGGAAACTTCCAGGGAAGTGCAGCAACTTCTTCAGCGGGTAGCAACTATA
ACGCCGGAGCTGCAACGGCCCCTGCCGGTGTAGCACAGAACGACGAGCCAGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.094

100

0.503
  ssb Neisseria meningitidis MC58

43.353

100

0.484
  ssb Vibrio cholerae strain A1552

42.373

100

0.484
  ssb Neisseria gonorrhoeae MS11

45.161

100

0.452

Multiple sequence alignment