Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   IBL27_RS07255 Genome accession   NZ_CP061071
Coordinates   1483254..1483910 (+) Length   218 a.a.
NCBI ID   WP_002266318.1    Uniprot ID   Q9KWH4
Organism   Streptococcus mutans B04Sm5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1478254..1488910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS07225 (IBL27_07225) - 1478489..1478743 (-) 255 WP_002262064.1 DUF3165 family protein -
  IBL27_RS07230 (IBL27_07230) typA 1478772..1480616 (-) 1845 WP_002262063.1 translational GTPase TypA -
  IBL27_RS07235 (IBL27_07235) - 1480850..1481239 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  IBL27_RS07240 (IBL27_07240) - 1481249..1482220 (-) 972 WP_002268147.1 ROK family glucokinase -
  IBL27_RS07245 (IBL27_07245) - 1482213..1482419 (-) 207 WP_002262060.1 YqgQ family protein -
  IBL27_RS07250 (IBL27_07250) dpr 1482626..1483153 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  IBL27_RS07255 (IBL27_07255) cclA/cilC 1483254..1483910 (+) 657 WP_002266318.1 prepilin peptidase Machinery gene
  IBL27_RS07260 (IBL27_07260) trpA 1484147..1484929 (-) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  IBL27_RS07265 (IBL27_07265) trpB 1484933..1486144 (-) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  IBL27_RS07270 (IBL27_07270) - 1486141..1486722 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  IBL27_RS07275 (IBL27_07275) trpC 1486709..1487476 (-) 768 WP_002262054.1 indole-3-glycerol phosphate synthase TrpC -
  IBL27_RS07280 (IBL27_07280) trpD 1487469..1488476 (-) 1008 WP_002283410.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24893.10 Da        Isoelectric Point: 8.5763

>NTDB_id=419819 IBL27_RS07255 WP_002266318.1 1483254..1483910(+) (cclA/cilC) [Streptococcus mutans B04Sm5]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFF
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=419819 IBL27_RS07255 WP_002266318.1 1483254..1483910(+) (cclA/cilC) [Streptococcus mutans B04Sm5]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCTTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9KWH4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.791

98.624

0.422

  cclA/cilC Streptococcus pneumoniae Rx1

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae D39

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae R6

42.254

97.706

0.413

  cclA/cilC Streptococcus mitis NCTC 12261

41.86

98.624

0.413

  cclA/cilC Streptococcus pneumoniae TIGR4

41.315

97.706

0.404


Multiple sequence alignment