Detailed information NTG0419738

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: IBL27_RS00365
• Genome accession: NZ_CP061071
• Coordinates: 66605..67600 (+)
• Length: 331 a.a.
• NCBI ID: WP_002269367.1
• Uniprot ID: -
• Organism: Streptococcus mutans B04Sm5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 61605..72600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBL27_RS00350 (IBL27_00350)	-	61905..62591 (+)	687	WP_002279174.1	DNA alkylation repair protein	-
IBL27_RS00355 (IBL27_00355)	comR	62977..63891 (+)	915	WP_002266376.1	helix-turn-helix domain-containing protein	Regulator
IBL27_RS00360 (IBL27_00360)	-	64425..66269 (-)	1845	WP_002288542.1	carbohydrate-binding domain-containing protein	-
IBL27_RS00365 (IBL27_00365)	ruvB	66605..67600 (+)	996	WP_002269367.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IBL27_RS00370 (IBL27_00370)	-	67638..68063 (+)	426	WP_002264681.1	low molecular weight protein-tyrosine-phosphatase	-
IBL27_RS00375 (IBL27_00375)	-	68128..68511 (+)	384	WP_011074470.1	membrane protein	-
IBL27_RS00380 (IBL27_00380)	-	68508..70298 (+)	1791	WP_002308392.1	acyltransferase family protein	-
IBL27_RS00385 (IBL27_00385)	thrC	70981..72465 (+)	1485	WP_002308390.1	threonine synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37271.71 Da
• Isoelectric Point: 4.7070

>NTDB_id=419738 IBL27_RS00365 WP_002269367.1 66605..67600(+) (ruvB) [Streptococcus mutans B04Sm5]
MTRILDNEPMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide

• Length: 996 bp

>NTDB_id=419738 IBL27_RS00365 WP_002269367.1 66605..67600(+) (ruvB) [Streptococcus mutans B04Sm5]
ATGACTAGAATTTTAGATAACGAACCTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCTGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGGGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCGGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTATCAAATCCTTTGCGGGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATCGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTCCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAGGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAGGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	91.239	100	0.912
ruvB	Streptococcus pneumoniae R6	90.937	100	0.909
ruvB	Streptococcus pneumoniae D39	90.937	100	0.909
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.583	0.595
ruvB	Helicobacter pylori 26695	50.464	97.583	0.492
ruvB	Synechocystis sp. PCC 6803	50.479	94.562	0.477