Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSF17_RS27740 Genome accession   NZ_CP048051
Coordinates   6142049..6142561 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain zm-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6137049..6147561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF17_RS27715 - 6137141..6138136 (+) 996 WP_038575408.1 lysylphosphatidylglycerol synthase domain-containing protein -
  GSF17_RS27720 - 6138209..6138964 (-) 756 WP_038575407.1 alpha/beta hydrolase family protein -
  GSF17_RS27725 - 6138954..6140063 (-) 1110 WP_124309675.1 DUF3182 family protein -
  GSF17_RS27730 - 6140244..6141251 (-) 1008 WP_124309676.1 GlxA family transcriptional regulator -
  GSF17_RS27735 - 6141355..6141909 (+) 555 WP_096375573.1 cysteine hydrolase family protein -
  GSF17_RS27740 ssb 6142049..6142561 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  GSF17_RS27745 - 6142571..6143965 (-) 1395 WP_162096194.1 MFS transporter -
  GSF17_RS27750 uvrA 6144146..6146980 (+) 2835 WP_081359606.1 excinuclease ABC subunit UvrA -
  GSF17_RS27755 bfr 6147074..6147538 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=419708 GSF17_RS27740 WP_009045846.1 6142049..6142561(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=419708 GSF17_RS27740 WP_009045846.1 6142049..6142561(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain zm-1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment