Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FYK61_RS14690 Genome accession   NZ_CP048044
Coordinates   3424958..3425488 (-) Length   176 a.a.
NCBI ID   WP_007966190.1    Uniprot ID   A0A7Z7IZG5
Organism   Xanthomonas citri strain UnB-Xtec2D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3419958..3430488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK61_RS14670 (FYK61_14680) - 3419992..3420942 (-) 951 WP_194271614.1 xanthine dehydrogenase family protein subunit M -
  FYK61_RS14675 (FYK61_14685) paoA 3420939..3421589 (-) 651 WP_007966196.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  FYK61_RS14680 (FYK61_14690) - 3421889..3422896 (-) 1008 WP_007966194.1 NAD(P)-dependent alcohol dehydrogenase -
  FYK61_RS14685 (FYK61_14695) - 3423121..3424668 (+) 1548 WP_007973456.1 sensor domain-containing diguanylate cyclase -
  FYK61_RS14690 (FYK61_14700) ssb 3424958..3425488 (-) 531 WP_007966190.1 single-stranded DNA-binding protein Machinery gene
  FYK61_RS14695 (FYK61_14705) - 3425763..3426761 (+) 999 WP_022558880.1 polyprenyl synthetase family protein -
  FYK61_RS14700 (FYK61_14710) - 3426962..3427762 (-) 801 WP_194271615.1 dienelactone hydrolase family protein -
  FYK61_RS14710 (FYK61_14720) murD 3428100..3429506 (-) 1407 WP_007966186.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18867.73 Da        Isoelectric Point: 5.3095

>NTDB_id=419655 FYK61_RS14690 WP_007966190.1 3424958..3425488(-) (ssb) [Xanthomonas citri strain UnB-Xtec2D]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGGYGGGGQDYAPRRQQPAQQ
QSAPPMDDFADDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=419655 FYK61_RS14690 WP_007966190.1 3424958..3425488(-) (ssb) [Xanthomonas citri strain UnB-Xtec2D]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTCGAAAAATACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCGGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGCGGGCAGGGTGGTGGCGGATATGGTGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCCCAGCAG
CAGTCGGCGCCGCCCATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7IZG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.845

100

0.494
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.477
  ssb Neisseria meningitidis MC58

45.251

100

0.46
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.46

Multiple sequence alignment