Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GWQ43_RS19115 Genome accession   NZ_CP048039
Coordinates   4187512..4188027 (-) Length   171 a.a.
NCBI ID   WP_035269622.1    Uniprot ID   A0AAE9H8A3
Organism   Alcaligenes faecalis strain MUB14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4182512..4193027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ43_RS19100 (GWQ43_19075) - 4183312..4183812 (+) 501 WP_045929377.1 sigma-70 family RNA polymerase sigma factor -
  GWQ43_RS19105 (GWQ43_19080) - 4183833..4184774 (+) 942 WP_238399650.1 FecR domain-containing protein -
  GWQ43_RS19110 (GWQ43_19085) - 4184854..4187325 (+) 2472 WP_162091009.1 TonB-dependent siderophore receptor -
  GWQ43_RS19115 (GWQ43_19090) ssb 4187512..4188027 (-) 516 WP_035269622.1 single-stranded DNA-binding protein Machinery gene
  GWQ43_RS19120 (GWQ43_19095) - 4188287..4189498 (-) 1212 WP_143241245.1 MFS transporter -
  GWQ43_RS19125 (GWQ43_19100) uvrA 4189610..4192573 (+) 2964 WP_162091165.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.84 Da        Isoelectric Point: 5.3412

>NTDB_id=419649 GWQ43_RS19115 WP_035269622.1 4187512..4188027(-) (ssb) [Alcaligenes faecalis strain MUB14]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=419649 GWQ43_RS19115 WP_035269622.1 4187512..4188027(-) (ssb) [Alcaligenes faecalis strain MUB14]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATCGCGGGTGAGTACCTGCGCAAAGGCCGTCCCGTTTACGTAGAAGGT
CGCCTGCGCACCCGTAAATGGACAGGTCAGGATGGTCAGGAGCGTTTCACGACCGAGATCATCGCTGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGCACCAG
CTCCACAACGTGCTCAGCGCCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.323

100

0.567
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.544
  ssb Neisseria meningitidis MC58

48.066

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509

Multiple sequence alignment