Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GUY17_RS19585 Genome accession   NZ_CP048031
Coordinates   4565309..4566235 (+) Length   308 a.a.
NCBI ID   WP_162024082.1    Uniprot ID   A0AAE6SWD7
Organism   Shewanella sp. Arc9-LZ     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4560309..4571235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUY17_RS19570 (GUY17_19600) - 4560637..4562004 (-) 1368 WP_162024079.1 O-antigen ligase -
  GUY17_RS19575 (GUY17_19605) pilB 4562202..4563908 (+) 1707 WP_162024080.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GUY17_RS19580 (GUY17_19610) pilC 4564018..4565277 (+) 1260 WP_162024081.1 type II secretion system F family protein Machinery gene
  GUY17_RS19585 (GUY17_19615) pilD 4565309..4566235 (+) 927 WP_162024082.1 A24 family peptidase Machinery gene
  GUY17_RS19590 (GUY17_19620) coaE 4566232..4566861 (+) 630 WP_162024083.1 dephospho-CoA kinase -
  GUY17_RS19595 (GUY17_19625) zapD 4566854..4567588 (+) 735 WP_162024084.1 cell division protein ZapD -
  GUY17_RS19600 (GUY17_19630) yacG 4567631..4567843 (+) 213 WP_162024085.1 DNA gyrase inhibitor YacG -
  GUY17_RS19605 (GUY17_19635) mutT 4567867..4568262 (+) 396 WP_162024086.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34387.99 Da        Isoelectric Point: 8.0281

>NTDB_id=419634 GUY17_RS19585 WP_162024082.1 4565309..4566235(+) (pilD) [Shewanella sp. Arc9-LZ]
MTEFISTFVATMIQNPWVFVAISFIFAATIGSFLNVVIHRLPVMMKREWQSECNFYLNEYHPDIVKQVGSERLQKAIDPF
PEKYNLVVPGSACPKCKANIKPWHNLPILGWMMLKGKCADCKTSISSRYPIIELLTGVLIAALAWHFGPTWQFVYASILT
FVLVALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYTSPEDAIIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAV
FGAWLGWQMLPLIILLSSLVGAVVGITMIMTKKLNKGNPIPFGPYIAAAGWIALVWGHDILNWYLSTL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=419634 GUY17_RS19585 WP_162024082.1 4565309..4566235(+) (pilD) [Shewanella sp. Arc9-LZ]
ATGACTGAATTCATCTCTACTTTTGTTGCAACAATGATTCAAAACCCTTGGGTCTTTGTTGCGATTAGCTTTATTTTTGC
TGCCACCATTGGCAGCTTTCTCAACGTCGTGATCCACCGTTTACCGGTGATGATGAAACGTGAATGGCAAAGCGAATGTA
ACTTTTATCTCAACGAATATCATCCTGACATTGTTAAACAAGTAGGCAGTGAGCGTTTACAGAAAGCCATCGATCCCTTT
CCTGAAAAATACAATCTGGTAGTGCCAGGTTCCGCCTGCCCTAAATGCAAGGCCAATATAAAGCCTTGGCATAATCTGCC
AATATTAGGTTGGATGATGCTTAAGGGTAAGTGTGCTGATTGCAAAACCAGTATTTCAAGCCGTTATCCCATTATTGAAC
TGTTAACTGGCGTATTAATTGCCGCATTAGCATGGCATTTTGGCCCAACATGGCAATTTGTGTATGCCAGCATTCTAACG
TTTGTGTTAGTGGCGTTAACTGGCATCGATTTAGATGAAATGCTATTACCGGATCAGCTAACGTTACCAATTCTTTGGTT
AGGATTAATCATTAACCTTAAAGGCATTTATACCAGTCCGGAAGACGCGATTATTGGCGCTGCTGCAGGGTATTTAAGTT
TATGGTCGGTATTCTGGTTATTTAAATTAGTTACTGGCAAAGAAGGTATGGGCTACGGTGACTTTAAACTATTAGCCGTT
TTCGGTGCCTGGTTAGGCTGGCAAATGCTGCCATTAATTATTTTACTGTCTTCACTAGTAGGCGCGGTAGTTGGCATAAC
CATGATTATGACTAAGAAGCTCAACAAAGGTAACCCAATCCCCTTTGGTCCTTATATCGCTGCAGCAGGCTGGATAGCGT
TAGTATGGGGACATGACATTCTTAATTGGTATCTTAGTACGTTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(158-266)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

51.701

95.455

0.494
  pilD Acinetobacter nosocomialis M2

49.007

98.052

0.481
  pilD Vibrio cholerae strain A1552

50

95.455

0.477
  pilD Acinetobacter baumannii D1279779

47.712

99.351

0.474
  pilD Neisseria gonorrhoeae MS11

44.138

94.156

0.416

Multiple sequence alignment