Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GT972_RS14320 | Genome accession | NZ_CP048030 |
| Coordinates | 2998571..2999077 (+) | Length | 168 a.a. |
| NCBI ID | WP_162079220.1 | Uniprot ID | A0A6P1UC14 |
| Organism | Sinimarinibacterium sp. NLF-5-8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2993571..3004077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT972_RS14300 (GT972_14300) | - | 2993861..2994163 (-) | 303 | WP_162079216.1 | hypothetical protein | - |
| GT972_RS14305 (GT972_14305) | - | 2994221..2994409 (-) | 189 | WP_162079217.1 | oxidoreductase-like domain-containing protein | - |
| GT972_RS14310 (GT972_14310) | uvrA | 2994414..2997242 (-) | 2829 | WP_162079218.1 | excinuclease ABC subunit UvrA | - |
| GT972_RS14315 (GT972_14315) | - | 2997383..2998567 (+) | 1185 | WP_162079219.1 | MFS transporter | - |
| GT972_RS14320 (GT972_14320) | ssb | 2998571..2999077 (+) | 507 | WP_162079220.1 | single-stranded DNA-binding protein | Machinery gene |
| GT972_RS14325 (GT972_14325) | - | 2999298..3001721 (+) | 2424 | WP_162079221.1 | cyclic nucleotide-binding domain-containing protein | - |
| GT972_RS14330 (GT972_14330) | - | 3001708..3002730 (+) | 1023 | WP_162079222.1 | hypothetical protein | - |
| GT972_RS14335 (GT972_14335) | - | 3002754..3004058 (+) | 1305 | WP_162079223.1 | cytochrome c3 family protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18316.48 Da Isoelectric Point: 5.9684
>NTDB_id=419615 GT972_RS14320 WP_162079220.1 2998571..2999077(+) (ssb) [Sinimarinibacterium sp. NLF-5-8]
MARGVNKVILIGNLGKDPEVRYFPSGDPIANATIATTESWKDRQTGETKEATEWHNVVFPGKLGEIAGKYLRKGSKVYVE
GSLRTRKWTDKEGRDRYTTEIRVQDMQMLDGRPSGGAAPMGDDGYGGGYDAPATPPASRRAPPPSRPAPQQQPESAMGDI
PLDDDIPF
MARGVNKVILIGNLGKDPEVRYFPSGDPIANATIATTESWKDRQTGETKEATEWHNVVFPGKLGEIAGKYLRKGSKVYVE
GSLRTRKWTDKEGRDRYTTEIRVQDMQMLDGRPSGGAAPMGDDGYGGGYDAPATPPASRRAPPPSRPAPQQQPESAMGDI
PLDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=419615 GT972_RS14320 WP_162079220.1 2998571..2999077(+) (ssb) [Sinimarinibacterium sp. NLF-5-8]
ATGGCTCGCGGCGTAAACAAAGTCATCTTGATTGGCAATCTCGGCAAAGATCCCGAGGTGCGCTATTTTCCCAGCGGCGA
TCCGATTGCCAATGCCACGATTGCCACCACCGAGAGCTGGAAGGATCGGCAGACGGGCGAAACCAAGGAGGCGACCGAGT
GGCATAACGTCGTATTTCCCGGCAAATTGGGCGAAATTGCCGGCAAATACCTCAGAAAAGGCTCAAAGGTCTACGTCGAA
GGCAGTCTGCGCACGCGCAAATGGACCGACAAGGAAGGCCGCGATCGTTACACCACCGAAATCCGCGTGCAGGACATGCA
GATGCTCGATGGCAGACCCAGCGGCGGCGCGGCTCCGATGGGGGATGACGGCTATGGCGGTGGCTATGATGCGCCTGCCA
CCCCCCCTGCGTCGCGCCGTGCGCCGCCGCCGTCACGTCCGGCGCCGCAGCAGCAGCCCGAATCGGCCATGGGCGATATC
CCGCTGGATGACGACATCCCGTTCTAG
ATGGCTCGCGGCGTAAACAAAGTCATCTTGATTGGCAATCTCGGCAAAGATCCCGAGGTGCGCTATTTTCCCAGCGGCGA
TCCGATTGCCAATGCCACGATTGCCACCACCGAGAGCTGGAAGGATCGGCAGACGGGCGAAACCAAGGAGGCGACCGAGT
GGCATAACGTCGTATTTCCCGGCAAATTGGGCGAAATTGCCGGCAAATACCTCAGAAAAGGCTCAAAGGTCTACGTCGAA
GGCAGTCTGCGCACGCGCAAATGGACCGACAAGGAAGGCCGCGATCGTTACACCACCGAAATCCGCGTGCAGGACATGCA
GATGCTCGATGGCAGACCCAGCGGCGGCGCGGCTCCGATGGGGGATGACGGCTATGGCGGTGGCTATGATGCGCCTGCCA
CCCCCCCTGCGTCGCGCCGTGCGCCGCCGCCGTCACGTCCGGCGCCGCAGCAGCAGCCCGAATCGGCCATGGGCGATATC
CCGCTGGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.237 |
100 |
0.571 |
| ssb | Glaesserella parasuis strain SC1401 |
49.162 |
100 |
0.524 |
| ssb | Neisseria gonorrhoeae MS11 |
45.977 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
45.977 |
100 |
0.476 |