Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   GVU25_RS00715 Genome accession   NZ_CP048014
Coordinates   161372..162595 (-) Length   407 a.a.
NCBI ID   WP_004970117.1    Uniprot ID   A0A2A5PE16
Organism   Acinetobacter towneri strain 205     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 156372..167595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS00685 (GVU25_00685) - 157010..157918 (+) 909 WP_136144380.1 DMT family transporter -
  GVU25_RS00690 (GVU25_00690) - 158003..158296 (-) 294 WP_004970123.1 hypothetical protein -
  GVU25_RS00695 (GVU25_00695) - 158428..159351 (+) 924 Protein_131 RNA-guided endonuclease InsQ/TnpB family protein -
  GVU25_RS00700 (GVU25_00700) - 159394..160362 (-) 969 WP_167845689.1 IS110 family transposase -
  GVU25_RS00705 (GVU25_00705) - 160582..160719 (+) 138 Protein_133 zinc ribbon domain-containing protein -
  GVU25_RS00710 (GVU25_00710) - 160754..161323 (-) 570 WP_004970120.1 L-threonylcarbamoyladenylate synthase -
  GVU25_RS00715 (GVU25_00715) dprA 161372..162595 (-) 1224 WP_004970117.1 DNA-processing protein DprA Machinery gene
  GVU25_RS00720 (GVU25_00720) tsaP 162613..163770 (-) 1158 WP_154321170.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GVU25_RS00725 (GVU25_00725) def 163890..164420 (+) 531 WP_019837182.1 peptide deformylase -
  GVU25_RS00730 (GVU25_00730) - 164536..164970 (+) 435 WP_154321168.1 DUF2946 family protein -
  GVU25_RS00735 (GVU25_00735) - 165034..167052 (+) 2019 WP_167845690.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 45044.12 Da        Isoelectric Point: 6.7787

>NTDB_id=419421 GVU25_RS00715 WP_004970117.1 161372..162595(-) (dprA) [Acinetobacter towneri strain 205]
MLNSFSPQQINYILLWYLVQHSLSSFSKLVQHYGSVAAAVQPEHLLTWSDVRIHANHLQRAKEYLSPTGQLAFEQCLNQL
QQQCDFILTLDDADYPNQLRPYSNKPPILFGQGNAQALLQAQIAIVGSRKASPHGRQVAYDFAYYLSEQGFFINSGLAQG
IDEAAHQGALQHQRTIAVMGTGLDSTYPSAHHSLRQKIVESGGAVITEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAKLAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWQYQQNQIASSQNQTTAAST
KAKLSTPPTEAILQTTTTKTADTSTPHIPEHLLALYQQLDWVGQSIDHLAQQLNLDIATLTSALMELELMGFCLQQSGLY
LRCRPLK

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=419421 GVU25_RS00715 WP_004970117.1 161372..162595(-) (dprA) [Acinetobacter towneri strain 205]
ATGTTGAATTCATTCAGCCCACAGCAAATCAACTACATTTTGTTGTGGTATTTGGTTCAACATTCACTGTCTAGTTTTTC
CAAACTCGTACAACATTATGGTTCCGTGGCTGCCGCAGTGCAGCCCGAACACCTCCTCACATGGTCAGATGTGCGCATTC
ATGCCAACCATCTACAACGCGCCAAAGAATATCTCAGCCCAACAGGGCAACTCGCCTTTGAACAATGTCTGAATCAACTG
CAACAGCAGTGCGATTTTATTCTAACTTTGGACGATGCGGACTATCCCAATCAGTTACGACCCTATTCCAACAAGCCACC
CATTTTATTTGGGCAAGGCAATGCACAGGCTTTGTTGCAAGCGCAAATTGCGATTGTCGGCAGTCGCAAAGCCAGCCCGC
ATGGTCGGCAAGTGGCTTATGATTTTGCTTATTATTTAAGTGAACAAGGGTTCTTTATCAATAGTGGTTTGGCACAAGGT
ATTGATGAAGCCGCACATCAAGGTGCTTTGCAACATCAACGTACCATTGCAGTCATGGGCACAGGTTTGGACAGCACTTA
TCCAAGTGCACATCACAGCCTGCGCCAAAAAATTGTAGAATCTGGTGGTGCCGTGATTACGGAGTTTTTACCACAGACTA
AGCCCTTACAGCAACATTTTCCACGACGTAACCGTATTGTCAGTGGACTAAGTTTAGGCGTGATTGTTGCTGAAGCCAGT
TTAAATAGTGGCTCGCTGATTACCGCGAAACTGGCAGCAGAGCAAGGCAAATTAATTTTTGCGATTCCTGGACATATTTA
CAGTGAATTTCATCAGGGTTGCCATCAATTGATTCGTGAAGGTGCAATTTTAGTGGATCATCCTGAACAAGTGATTGAAG
ATTTAGCCCTACCCACCCAATGGCAATATCAACAAAACCAAATAGCATCAAGCCAAAATCAGACTACAGCAGCTTCAACA
AAAGCAAAATTATCTACACCACCGACTGAAGCAATACTTCAAACCACCACAACAAAAACAGCAGATACAAGTACACCGCA
TATTCCCGAGCATTTATTGGCACTGTATCAACAACTGGATTGGGTCGGACAAAGCATCGATCACTTGGCACAGCAACTGA
ATTTAGATATTGCCACACTCACCAGCGCATTAATGGAACTGGAACTCATGGGCTTCTGTTTACAACAATCAGGTTTATAT
CTGCGTTGTCGTCCACTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2A5PE16

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.129

99.263

0.617

  dprA Acinetobacter baumannii D1279779

61.634

99.263

0.612

  dprA Acinetobacter baylyi ADP1

58.416

99.263

0.58


Multiple sequence alignment