Detailed information NTG0419422

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: IBB96_RS09790
• Genome accession: NZ_CP061023
• Coordinates: 1871912..1873012 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 13499
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1866912..1878012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB96_RS09765 (IBB96_09795)	pgsA	1867454..1867996 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
IBB96_RS09770 (IBB96_09800)	-	1868009..1868866 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
IBB96_RS09775 (IBB96_09805)	-	1868925..1870202 (-)	1278	WP_011226704.1	pitrilysin family protein	-
IBB96_RS09780 (IBB96_09810)	-	1870204..1871454 (-)	1251	WP_011681762.1	pitrilysin family protein	-
IBB96_RS09785 (IBB96_09815)	yaaA	1871532..1871909 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
IBB96_RS09790 (IBB96_09820)	recF	1871912..1873012 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
IBB96_RS09795 (IBB96_09825)	guaB	1873181..1874662 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
IBB96_RS09800 (IBB96_09830)	trpS	1874839..1875861 (-)	1023	WP_207560006.1	tryptophan--tRNA ligase	-
IBB96_RS09805 (IBB96_09835)	-	1876289..1877161 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=419422 IBB96_RS09790 WP_002947786.1 1871912..1873012(+) (recF) [Streptococcus thermophilus strain 13499]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=419422 IBB96_RS09790 WP_002947786.1 1871912..1873012(+) (recF) [Streptococcus thermophilus strain 13499]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432