Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GWK37_RS16505 Genome accession   NZ_CP048002
Coordinates   3288429..3289025 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain CACC 316     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3283429..3294025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS16475 (GWK37_16485) - 3283643..3284098 (+) 456 WP_007409622.1 flavodoxin -
  GWK37_RS16480 (GWK37_16490) dapD 3284180..3284890 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GWK37_RS16485 (GWK37_16495) - 3284961..3286085 (+) 1125 WP_115940829.1 N-acetyldiaminopimelate deacetylase -
  GWK37_RS16490 (GWK37_16500) - 3286146..3286391 (+) 246 WP_003154596.1 YkuS family protein -
  GWK37_RS16495 (GWK37_16505) - 3286425..3287231 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  GWK37_RS16500 (GWK37_16510) - 3287519..3287977 (+) 459 WP_115940973.1 TlpA disulfide reductase family protein -
  GWK37_RS16505 (GWK37_16515) rok 3288429..3289025 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  GWK37_RS16510 (GWK37_16520) - 3289046..3290038 (-) 993 WP_115940828.1 sporulation protein -
  GWK37_RS16515 (GWK37_16525) - 3290184..3290786 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  GWK37_RS16520 (GWK37_16530) - 3290838..3291857 (+) 1020 WP_110085530.1 molybdopterin-synthase adenylyltransferase MoeB -
  GWK37_RS16525 (GWK37_16535) glp 3291875..3293167 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  GWK37_RS16530 (GWK37_16540) mobB 3293128..3293649 (+) 522 WP_110085529.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=419263 GWK37_RS16505 WP_003154591.1 3288429..3289025(+) (rok) [Bacillus velezensis strain CACC 316]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=419263 GWK37_RS16505 WP_003154591.1 3288429..3289025(+) (rok) [Bacillus velezensis strain CACC 316]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment