Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GWK37_RS09065 Genome accession   NZ_CP048002
Coordinates   1809762..1810280 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain CACC 316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1804762..1815280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS09035 (GWK37_09040) - 1805960..1806340 (-) 381 WP_115941220.1 VOC family protein -
  GWK37_RS09040 (GWK37_09045) - 1806397..1807335 (-) 939 WP_021494593.1 LacI family DNA-binding transcriptional regulator -
  GWK37_RS09045 (GWK37_09050) xth 1807398..1808156 (-) 759 WP_115941221.1 exodeoxyribonuclease III -
  GWK37_RS09050 (GWK37_09055) - 1808153..1808710 (-) 558 WP_115941222.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  GWK37_RS09055 (GWK37_09060) - 1808707..1809288 (-) 582 WP_115941223.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  GWK37_RS09060 (GWK37_09065) rpsR 1809479..1809718 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  GWK37_RS09065 (GWK37_09070) ssbA 1809762..1810280 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  GWK37_RS09070 (GWK37_09075) rpsF 1810320..1810607 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  GWK37_RS09075 (GWK37_09080) ychF 1810719..1811819 (-) 1101 WP_115941224.1 redox-regulated ATPase YchF -
  GWK37_RS09080 (GWK37_09085) - 1811946..1813949 (-) 2004 WP_115941225.1 molybdopterin-dependent oxidoreductase -
  GWK37_RS09085 (GWK37_09090) - 1813996..1814202 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=419233 GWK37_RS09065 WP_004392979.1 1809762..1810280(-) (ssbA) [Bacillus velezensis strain CACC 316]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=419233 GWK37_RS09065 WP_004392979.1 1809762..1810280(-) (ssbA) [Bacillus velezensis strain CACC 316]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment