Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ATC_RS05740 | Genome accession | NC_015850 |
| Coordinates | 1159046..1159552 (+) | Length | 168 a.a. |
| NCBI ID | WP_014002673.1 | Uniprot ID | F9ZLD2 |
| Organism | Acidithiobacillus caldus SM-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1154046..1164552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATC_RS05715 | - | 1155179..1155358 (+) | 180 | WP_041636158.1 | hypothetical protein | - |
| ATC_RS05725 (Atc_1149) | - | 1156723..1157664 (+) | 942 | WP_014002670.1 | phospholipase D-like domain-containing protein | - |
| ATC_RS05730 (Atc_1150) | - | 1157621..1158433 (+) | 813 | WP_233444868.1 | metallophosphoesterase | - |
| ATC_RS17320 | - | 1158479..1158646 (+) | 168 | WP_187288657.1 | hypothetical protein | - |
| ATC_RS16350 (Atc_1151) | - | 1158656..1159000 (+) | 345 | WP_014002672.1 | TraR/DksA C4-type zinc finger protein | - |
| ATC_RS05740 (Atc_1152) | ssb | 1159046..1159552 (+) | 507 | WP_014002673.1 | single-stranded DNA-binding protein | Machinery gene |
| ATC_RS05755 (Atc_1154) | - | 1160018..1160551 (+) | 534 | WP_103415113.1 | uracil-DNA glycosylase | - |
| ATC_RS05760 (Atc_1155) | - | 1160618..1160977 (+) | 360 | WP_014002676.1 | hypothetical protein | - |
| ATC_RS05765 (Atc_1156) | - | 1161126..1161542 (+) | 417 | WP_014002677.1 | hypothetical protein | - |
| ATC_RS05770 (Atc_1157) | - | 1161852..1162649 (+) | 798 | WP_041636166.1 | metallophosphoesterase | - |
| ATC_RS05775 (Atc_1158) | - | 1162860..1163390 (+) | 531 | WP_014002679.1 | hypothetical protein | - |
| ATC_RS05780 (Atc_1159) | - | 1163456..1163986 (+) | 531 | WP_014002680.1 | hypothetical protein | - |
| ATC_RS05785 | - | 1164023..1164427 (+) | 405 | WP_041636169.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18796.95 Da Isoelectric Point: 9.5420
>NTDB_id=41922 ATC_RS05740 WP_014002673.1 1159046..1159552(+) (ssb) [Acidithiobacillus caldus SM-1]
MSGVNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRFQMVGSRRDRDGQESANGGSKNGRPASKGSGGGANMDVPPEDFDDEIPFAIAADIAR
RGLRRVRF
MSGVNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRFQMVGSRRDRDGQESANGGSKNGRPASKGSGGGANMDVPPEDFDDEIPFAIAADIAR
RGLRRVRF
Nucleotide
Download Length: 507 bp
>NTDB_id=41922 ATC_RS05740 WP_014002673.1 1159046..1159552(+) (ssb) [Acidithiobacillus caldus SM-1]
ATGAGTGGTGTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATCGTCGGCGATCGTTTTCAGATGGT
TGGCAGTCGCCGGGACAGGGACGGTCAGGAATCCGCGAACGGCGGTTCCAAGAATGGCCGTCCGGCTTCCAAGGGCTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGAGGATTTTGACGACGAGATTCCGTTCGCGATCGCTGCGGATATCGCGCGT
CGAGGATTGCGGCGGGTTCGGTTCTGA
ATGAGTGGTGTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATCGTCGGCGATCGTTTTCAGATGGT
TGGCAGTCGCCGGGACAGGGACGGTCAGGAATCCGCGAACGGCGGTTCCAAGAATGGCCGTCCGGCTTCCAAGGGCTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGAGGATTTTGACGACGAGATTCCGTTCGCGATCGCTGCGGATATCGCGCGT
CGAGGATTGCGGCGGGTTCGGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
49.18 |
100 |
0.536 |
| ssb | Vibrio cholerae strain A1552 |
50 |
100 |
0.524 |
| ssb | Neisseria meningitidis MC58 |
43.023 |
100 |
0.44 |
| ssb | Neisseria gonorrhoeae MS11 |
42.442 |
100 |
0.435 |