Detailed information NTG0418992

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GWG10_RS02245
• Genome accession: NZ_CP047983
• Coordinates: 452875..453750 (-)
• Length: 291 a.a.
• NCBI ID: WP_103261555.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain 1605-27183
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 447875..458750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWG10_RS02220 (GWG10_02220)	-	449624..450808 (+)	1185	WP_180911329.1	tetratricopeptide repeat protein	-
GWG10_RS02225 (GWG10_02225)	mutT	450817..451221 (+)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
GWG10_RS02230 (GWG10_02230)	yacG	451277..451471 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
GWG10_RS02235 (GWG10_02235)	zapD	451482..452204 (-)	723	WP_010675825.1	cell division protein ZapD	-
GWG10_RS02240 (GWG10_02240)	coaE	452242..452856 (-)	615	WP_180911330.1	dephospho-CoA kinase	-
GWG10_RS02245 (GWG10_02245)	pilD	452875..453750 (-)	876	WP_103261555.1	prepilin peptidase	Machinery gene
GWG10_RS02250 (GWG10_02250)	pilC	453828..455069 (-)	1242	WP_180911331.1	type II secretion system F family protein	Machinery gene
GWG10_RS02255 (GWG10_02255)	pilB	455197..456903 (-)	1707	WP_180911332.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GWG10_RS23145 (GWG10_02260)	-	456907..457452 (-)	546	WP_180911333.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GWG10_RS02265 (GWG10_02265)	nadC	457763..458626 (-)	864	WP_041213995.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31979.12 Da
• Isoelectric Point: 7.0913

>NTDB_id=418992 GWG10_RS02245 WP_103261555.1 452875..453750(-) (pilD) [Aeromonas caviae strain 1605-27183]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEATPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=418992 GWG10_RS02245 WP_103261555.1 452875..453750(-) (pilD) [Aeromonas caviae strain 1605-27183]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTCGTTATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGCAACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGTTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACAGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTTTCCTCG
CTGGCAGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAATCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46