Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IBC08_RS07780 Genome accession   NZ_CP061019
Coordinates   1502992..1503735 (-) Length   247 a.a.
NCBI ID   WP_084829069.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497992..1508735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS07750 (IBC08_07720) - 1498263..1499207 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  IBC08_RS07755 (IBC08_07725) sepM 1499292..1500368 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  IBC08_RS07760 (IBC08_07730) coaD 1500346..1500843 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  IBC08_RS07765 (IBC08_07735) rsmD 1500877..1501476 (-) 600 Protein_1492 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IBC08_RS07770 (IBC08_07740) trxB 1501567..1502520 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  IBC08_RS07775 (IBC08_07745) - 1502553..1502777 (-) 225 WP_087010135.1 DUF4059 family protein -
  IBC08_RS07780 (IBC08_07750) amiE 1502992..1503735 (-) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein Regulator
  IBC08_RS07785 (IBC08_07755) - 1503735..1504481 (-) 747 WP_179970821.1 amino acid ABC transporter permease -
  IBC08_RS07790 (IBC08_07760) - 1504877..1505707 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  IBC08_RS07795 (IBC08_07765) - 1506176..1506409 (-) 234 WP_065972545.1 hypothetical protein -
  IBC08_RS07800 (IBC08_07770) dinB 1506695..1507798 (-) 1104 WP_179971030.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7786

>NTDB_id=418992 IBC08_RS07780 WP_084829069.1 1502992..1503735(-) (amiE) [Streptococcus thermophilus strain 24853]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=418992 IBC08_RS07780 WP_084829069.1 1502992..1503735(-) (amiE) [Streptococcus thermophilus strain 24853]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment