Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GWK28_RS13770 Genome accession   NZ_CP047973
Coordinates   2895404..2895730 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2890404..2900730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS13770 (GWK28_13795) ssb 2895404..2895730 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  GWK28_RS13775 (GWK28_13800) - 2895984..2898413 (-) 2430 WP_187142537.1 DUF927 domain-containing protein -
  GWK28_RS13780 (GWK28_13805) - 2898406..2898699 (-) 294 WP_032014408.1 hypothetical protein -
  GWK28_RS13785 (GWK28_13810) - 2898692..2898994 (-) 303 WP_187142538.1 hypothetical protein -
  GWK28_RS13790 (GWK28_13815) - 2898991..2899233 (-) 243 WP_076753173.1 hypothetical protein -
  GWK28_RS13795 (GWK28_13820) - 2899243..2899611 (-) 369 WP_187142539.1 hypothetical protein -
  GWK28_RS13800 (GWK28_13825) - 2899604..2900110 (-) 507 WP_187142540.1 BRO family protein -
  GWK28_RS13805 (GWK28_13830) - 2900107..2900325 (-) 219 WP_002124817.1 helix-turn-helix domain-containing protein -
  GWK28_RS13810 (GWK28_13835) - 2900329..2900544 (-) 216 WP_020752871.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=418912 GWK28_RS13770 WP_002126519.1 2895404..2895730(-) (ssb) [Acinetobacter baumannii strain DETAB-P2]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=418912 GWK28_RS13770 WP_002126519.1 2895404..2895730(-) (ssb) [Acinetobacter baumannii strain DETAB-P2]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment