Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GV833_RS14850 Genome accession   NZ_CP047929
Coordinates   3187766..3188290 (-) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain ChSC1905     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3182766..3193290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV833_RS14830 (GV833_14875) plsB 3182981..3185464 (-) 2484 WP_004249159.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  GV833_RS14835 (GV833_14880) - 3185595..3185966 (+) 372 WP_004245908.1 diacylglycerol kinase -
  GV833_RS14840 (GV833_14885) lexA 3186094..3186705 (+) 612 WP_004245906.1 transcriptional repressor LexA -
  GV833_RS14845 (GV833_14890) zur 3186894..3187424 (-) 531 WP_004249161.1 zinc uptake transcriptional repressor Zur -
  GV833_RS14850 (GV833_14895) ssb 3187766..3188290 (-) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GV833_RS14855 (GV833_14900) uvrA 3188543..3191377 (+) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=418502 GV833_RS14850 WP_004249162.1 3187766..3188290(-) (ssb) [Proteus mirabilis strain ChSC1905]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=418502 GV833_RS14850 WP_004249162.1 3187766..3188290(-) (ssb) [Proteus mirabilis strain ChSC1905]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACTG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment