Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SALIVB_RS09365 Genome accession   NC_015760
Coordinates   2039120..2041090 (-) Length   656 a.a.
NCBI ID   WP_013991234.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2034120..2046090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09350 (SALIVB_1952) - 2034725..2035615 (-) 891 WP_013991231.1 hypothetical protein -
  SALIVB_RS09355 (SALIVB_1953) - 2035670..2036977 (-) 1308 WP_013991232.1 GHKL domain-containing protein -
  SALIVB_RS09360 (SALIVB_1955) gltX 2037430..2038884 (-) 1455 WP_013991233.1 glutamate--tRNA ligase -
  SALIVB_RS09365 (SALIVB_1956) amiA 2039120..2041090 (-) 1971 WP_013991234.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVB_RS09370 (SALIVB_1957) rplA 2041271..2041960 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  SALIVB_RS09375 (SALIVB_1958) rplK 2042060..2042485 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  SALIVB_RS09380 (SALIVB_1959) - 2042657..2043010 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  SALIVB_RS09385 (SALIVB_1960) - 2043105..2043602 (-) 498 WP_002885818.1 beta-class carbonic anhydrase -
  SALIVB_RS09390 (SALIVB_1961) - 2043753..2044448 (-) 696 WP_013991235.1 TIGR00266 family protein -
  SALIVB_RS09395 (SALIVB_1962) radA 2044536..2045897 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72859.71 Da        Isoelectric Point: 5.0816

>NTDB_id=41844 SALIVB_RS09365 WP_013991234.1 2039120..2041090(-) (amiA) [Streptococcus salivarius CCHSS3]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGSDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
EDWSVSQDGLTYTYKIRKGLKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGDFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
HVYFDNIKLTYDDGSDQESLERNFTDGVYNLARLFPTSSNYSKVEKQYKDNIFYTQPGSAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQSLGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSSKITVNQVQSIKQSVESALGKDNVVLDIHQLSADDFNN
ITYSASNAAAEDWDLSVGVAWDPDYLDPSTYLDVLKTTSSENTKSFMGYDDPNSQAVQKVGLKEYDQLVEDASKETTDLK
VRYEKYAKAQAWLTDSALYLPTTTYNGAAAVISRIKPFSGAYAQAGDKGSSYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=41844 SALIVB_RS09365 WP_013991234.1 2039120..2041090(-) (amiA) [Streptococcus salivarius CCHSS3]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTATGGTAGTGACCCTGCAACCTTGGACTATCTTGCTACAAACAAGAAAA
ATATGACTACAGCTGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATTTAAAACCTTCTGTCGCT
GAAGACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGACTTAAATGGTACACTTCAGATGG
CGAAGAATATGCCAATGTAACAGCTAAGGACTTTGTAACAGGTCTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACACTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACTTACTCTGTTAC
TTGGCCTGTTAATGGAGACTTCTTGAAATCTAAAGGTAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTTTATA
ACGGTCCATACCTTCTTAAGGCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
CACGTCTATTTTGATAATATCAAATTGACTTATGATGATGGATCAGACCAAGAGTCTTTGGAACGCAACTTTACAGATGG
TGTATACAACTTAGCACGTCTATTCCCAACAAGTTCTAACTATTCCAAAGTTGAAAAACAGTACAAAGATAATATTTTCT
ATACGCAACCTGGATCAGCTGTAGAAGGTGTTGGTATTAATATTGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTCAATAAGGATTTCCGTCAATCATTAGGTTTTGCTATTGACCGTAC
AAATTACGCCGCACAACTTAATGGTAAGGAAGGTGGAAGTACTGCCGTCCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAGGAAGCCCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGATGTCCCTGTTAATCAATCAAGTAAAATTACTGTGAATCAGGTACAATCAATTA
AACAGTCTGTTGAATCTGCTCTTGGAAAAGACAATGTTGTGCTTGATATTCACCAATTGTCGGCTGATGATTTTAACAAC
ATCACTTACTCTGCATCAAATGCAGCTGCAGAAGATTGGGACTTGTCAGTGGGTGTGGCTTGGGACCCTGATTACCTTGA
CCCTTCAACTTATCTTGATGTCTTGAAAACGACAAGTAGCGAAAATACTAAATCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCAGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGAAGATGCCTCTAAGGAAACAACAGACTTGAAG
GTTCGTTATGAAAAATATGCAAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACAACTACTTATAACGG
TGCAGCTGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTTCATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAAAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.665

100

0.697
  amiA3 Streptococcus thermophilus LMD-9

68.95

100

0.691
  amiA3 Streptococcus thermophilus LMG 18311

68.189

100

0.683

Multiple sequence alignment