Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SALIVB_RS09395 Genome accession   NC_015760
Coordinates   2044536..2045897 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039536..2050897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09370 (SALIVB_1957) rplA 2041271..2041960 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  SALIVB_RS09375 (SALIVB_1958) rplK 2042060..2042485 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  SALIVB_RS09380 (SALIVB_1959) - 2042657..2043010 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  SALIVB_RS09385 (SALIVB_1960) - 2043105..2043602 (-) 498 WP_002885818.1 beta-class carbonic anhydrase -
  SALIVB_RS09390 (SALIVB_1961) - 2043753..2044448 (-) 696 WP_013991235.1 TIGR00266 family protein -
  SALIVB_RS09395 (SALIVB_1962) radA 2044536..2045897 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  SALIVB_RS09400 (SALIVB_1963) - 2045894..2046361 (-) 468 WP_013991237.1 isochorismatase family protein -
  SALIVB_RS09405 (SALIVB_1964) - 2046372..2046818 (-) 447 WP_002885724.1 dUTP diphosphatase -
  SALIVB_RS09410 (SALIVB_1965) - 2047026..2047628 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  SALIVB_RS09415 (SALIVB_1966) - 2047647..2048897 (+) 1251 WP_013991238.1 NAD(P)H-dependent oxidoreductase -
  SALIVB_RS09420 (SALIVB_1967) - 2049014..2049805 (+) 792 WP_013991239.1 formate/nitrite transporter family protein -
  SALIVB_RS09425 (SALIVB_1968) - 2049814..2050374 (+) 561 WP_013991240.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=41845 SALIVB_RS09395 WP_072903619.1 2044536..2045897(-) (radA) [Streptococcus salivarius CCHSS3]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=41845 SALIVB_RS09395 WP_072903619.1 2044536..2045897(-) (radA) [Streptococcus salivarius CCHSS3]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCCTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGATGAGTTTAACCGTGTT
CTAGGTGGCGGTGTGGTTCCGGGTAGCCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCTAAG
CGGACAACAACGGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTTGCCGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACCGGAGAGATACGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCAAAAATTCTCT
GCACGGCATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment