Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GWG04_RS07540 Genome accession   NZ_CP047922
Coordinates   1478226..1478696 (-) Length   156 a.a.
NCBI ID   WP_029549393.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SR231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1473226..1483696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG04_RS07480 (GWG04_07480) - 1473392..1473778 (-) 387 WP_000592207.1 hypothetical protein -
  GWG04_RS07485 (GWG04_07485) - 1473775..1473981 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  GWG04_RS07490 (GWG04_07490) - 1473978..1474223 (-) 246 WP_057485222.1 hypothetical protein -
  GWG04_RS07495 (GWG04_07495) - 1474260..1474769 (-) 510 WP_031911468.1 dUTP pyrophosphatase -
  GWG04_RS07500 (GWG04_07500) - 1474762..1475004 (-) 243 WP_117220641.1 hypothetical protein -
  GWG04_RS07505 (GWG04_07505) - 1474994..1475230 (-) 237 WP_001065101.1 DUF1024 family protein -
  GWG04_RS07510 (GWG04_07510) - 1475223..1475579 (-) 357 WP_117220642.1 acetyltransferase -
  GWG04_RS14715 - 1475579..1475982 (-) 404 Protein_1464 hypothetical protein -
  GWG04_RS07515 (GWG04_07515) - 1475996..1476238 (-) 243 WP_117220643.1 SAV1978 family virulence-associated passenger protein -
  GWG04_RS07520 (GWG04_07520) - 1476242..1476610 (-) 369 WP_000101273.1 SA1788 family PVL leukocidin-associated protein -
  GWG04_RS07525 (GWG04_07525) - 1476623..1477078 (-) 456 WP_000401965.1 RusA family crossover junction endodeoxyribonuclease -
  GWG04_RS07530 (GWG04_07530) - 1477087..1477305 (-) 219 WP_000338528.1 hypothetical protein -
  GWG04_RS07535 (GWG04_07535) - 1477312..1478196 (-) 885 WP_117220644.1 DnaD domain protein -
  GWG04_RS07540 (GWG04_07540) ssbA 1478226..1478696 (-) 471 WP_029549393.1 single-stranded DNA-binding protein Machinery gene
  GWG04_RS07545 (GWG04_07545) - 1478697..1479314 (-) 618 WP_072528355.1 MBL fold metallo-hydrolase -
  GWG04_RS07550 (GWG04_07550) - 1479395..1480315 (-) 921 WP_000138475.1 recombinase RecT -
  GWG04_RS07555 (GWG04_07555) - 1480317..1482260 (-) 1944 WP_072532628.1 AAA family ATPase -
  GWG04_RS07560 (GWG04_07560) - 1482269..1482532 (-) 264 WP_001205732.1 hypothetical protein -
  GWG04_RS07565 (GWG04_07565) - 1482541..1482801 (-) 261 WP_117220666.1 DUF1108 family protein -
  GWG04_RS07570 (GWG04_07570) - 1482806..1483108 (-) 303 WP_000165363.1 DUF2482 family protein -
  GWG04_RS07575 (GWG04_07575) - 1483201..1483362 (-) 162 WP_000066025.1 DUF1270 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17654.38 Da        Isoelectric Point: 4.6228

>NTDB_id=418422 GWG04_RS07540 WP_029549393.1 1478226..1478696(-) (ssbA) [Staphylococcus aureus strain SR231]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=418422 GWG04_RS07540 WP_029549393.1 1478226..1478696(-) (ssbA) [Staphylococcus aureus strain SR231]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.017

100

0.692
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372

Multiple sequence alignment