Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GWG04_RS07540 | Genome accession | NZ_CP047922 |
| Coordinates | 1478226..1478696 (-) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SR231 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1446011..1488251 | 1478226..1478696 | within | 0 |
Gene organization within MGE regions
Location: 1446011..1488251
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWG04_RS07315 (GWG04_07320) | - | 1446011..1446211 (-) | 201 | WP_000498229.1 | hypothetical protein | - |
| GWG04_RS07320 (GWG04_07325) | - | 1446225..1446431 (-) | 207 | WP_000125170.1 | hypothetical protein | - |
| GWG04_RS07325 (GWG04_07330) | - | 1446914..1447168 (-) | 255 | WP_031807127.1 | hypothetical protein | - |
| GWG04_RS07330 (GWG04_07335) | - | 1447223..1448668 (-) | 1446 | WP_031807126.1 | SH3 domain-containing protein | - |
| GWG04_RS07335 (GWG04_07340) | - | 1448649..1449086 (-) | 438 | WP_001556691.1 | phage holin | - |
| GWG04_RS07340 (GWG04_07345) | - | 1449142..1449537 (-) | 396 | WP_000398878.1 | hypothetical protein | - |
| GWG04_RS07345 (GWG04_07350) | - | 1449542..1450780 (-) | 1239 | WP_064282041.1 | BppU family phage baseplate upper protein | - |
| GWG04_RS07350 (GWG04_07355) | - | 1450793..1452667 (-) | 1875 | WP_029265300.1 | glucosaminidase domain-containing protein | - |
| GWG04_RS07355 (GWG04_07360) | - | 1452804..1453103 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| GWG04_RS07360 (GWG04_07365) | - | 1453144..1453317 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| GWG04_RS07365 (GWG04_07370) | - | 1453321..1453698 (-) | 378 | WP_000705907.1 | DUF2977 domain-containing protein | - |
| GWG04_RS07370 (GWG04_07375) | - | 1453698..1455521 (-) | 1824 | WP_048657605.1 | phage baseplate upper protein | - |
| GWG04_RS07375 (GWG04_07380) | - | 1455521..1457419 (-) | 1899 | WP_017431804.1 | hypothetical protein | - |
| GWG04_RS07380 (GWG04_07385) | - | 1457432..1459318 (-) | 1887 | WP_001122001.1 | SGNH/GDSL hydrolase family protein | - |
| GWG04_RS07385 (GWG04_07390) | - | 1459329..1460270 (-) | 942 | WP_000560181.1 | phage tail domain-containing protein | - |
| GWG04_RS07390 (GWG04_07395) | - | 1460285..1463428 (-) | 3144 | WP_000379454.1 | hypothetical protein | - |
| GWG04_RS07395 (GWG04_07400) | - | 1463432..1463716 (-) | 285 | WP_000880587.1 | hypothetical protein | - |
| GWG04_RS07400 (GWG04_07405) | - | 1463761..1464267 (-) | 507 | WP_031833107.1 | tail assembly chaperone | - |
| GWG04_RS07405 (GWG04_07410) | - | 1464334..1464891 (-) | 558 | WP_000057582.1 | tail protein | - |
| GWG04_RS07410 (GWG04_07415) | - | 1464892..1465317 (-) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| GWG04_RS07415 (GWG04_07420) | - | 1465330..1465743 (-) | 414 | WP_001151330.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| GWG04_RS07420 (GWG04_07425) | - | 1465730..1466065 (-) | 336 | WP_000483041.1 | phage head closure protein | - |
| GWG04_RS07425 (GWG04_07430) | - | 1466077..1466427 (-) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| GWG04_RS07430 | - | 1466433..1466576 (-) | 144 | WP_000002931.1 | hypothetical protein | - |
| GWG04_RS07435 (GWG04_07435) | - | 1466588..1467502 (-) | 915 | WP_000235168.1 | phage major capsid protein | - |
| GWG04_RS07440 (GWG04_07440) | - | 1467519..1468103 (-) | 585 | WP_001019219.1 | DUF4355 domain-containing protein | - |
| GWG04_RS07445 (GWG04_07445) | - | 1468206..1468412 (-) | 207 | WP_000346033.1 | hypothetical protein | - |
| GWG04_RS07450 (GWG04_07450) | - | 1468414..1469367 (-) | 954 | WP_000184133.1 | phage head morphogenesis protein | - |
| GWG04_RS07455 (GWG04_07455) | - | 1469336..1470760 (-) | 1425 | WP_000177422.1 | phage portal protein | - |
| GWG04_RS07460 (GWG04_07460) | - | 1470757..1471980 (-) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| GWG04_RS07465 (GWG04_07465) | - | 1471973..1472467 (-) | 495 | WP_000594088.1 | terminase small subunit | - |
| GWG04_RS07470 (GWG04_07470) | - | 1472820..1473221 (-) | 402 | WP_000286968.1 | hypothetical protein | - |
| GWG04_RS07475 (GWG04_07475) | - | 1473222..1473395 (-) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| GWG04_RS07480 (GWG04_07480) | - | 1473392..1473778 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| GWG04_RS07485 (GWG04_07485) | - | 1473775..1473981 (-) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| GWG04_RS07490 (GWG04_07490) | - | 1473978..1474223 (-) | 246 | WP_057485222.1 | hypothetical protein | - |
| GWG04_RS07495 (GWG04_07495) | - | 1474260..1474769 (-) | 510 | WP_031911468.1 | dUTP pyrophosphatase | - |
| GWG04_RS07500 (GWG04_07500) | - | 1474762..1475004 (-) | 243 | WP_117220641.1 | hypothetical protein | - |
| GWG04_RS07505 (GWG04_07505) | - | 1474994..1475230 (-) | 237 | WP_001065101.1 | DUF1024 family protein | - |
| GWG04_RS07510 (GWG04_07510) | - | 1475223..1475579 (-) | 357 | WP_117220642.1 | acetyltransferase | - |
| GWG04_RS14715 | - | 1475579..1475982 (-) | 404 | Protein_1464 | hypothetical protein | - |
| GWG04_RS07515 (GWG04_07515) | - | 1475996..1476238 (-) | 243 | WP_117220643.1 | SAV1978 family virulence-associated passenger protein | - |
| GWG04_RS07520 (GWG04_07520) | - | 1476242..1476610 (-) | 369 | WP_000101273.1 | SA1788 family PVL leukocidin-associated protein | - |
| GWG04_RS07525 (GWG04_07525) | - | 1476623..1477078 (-) | 456 | WP_000401965.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GWG04_RS07530 (GWG04_07530) | - | 1477087..1477305 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| GWG04_RS07535 (GWG04_07535) | - | 1477312..1478196 (-) | 885 | WP_117220644.1 | DnaD domain protein | - |
| GWG04_RS07540 (GWG04_07540) | ssbA | 1478226..1478696 (-) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| GWG04_RS07545 (GWG04_07545) | - | 1478697..1479314 (-) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| GWG04_RS07550 (GWG04_07550) | - | 1479395..1480315 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| GWG04_RS07555 (GWG04_07555) | - | 1480317..1482260 (-) | 1944 | WP_072532628.1 | AAA family ATPase | - |
| GWG04_RS07560 (GWG04_07560) | - | 1482269..1482532 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| GWG04_RS07565 (GWG04_07565) | - | 1482541..1482801 (-) | 261 | WP_117220666.1 | DUF1108 family protein | - |
| GWG04_RS07570 (GWG04_07570) | - | 1482806..1483108 (-) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| GWG04_RS07575 (GWG04_07575) | - | 1483201..1483362 (-) | 162 | WP_000066025.1 | DUF1270 domain-containing protein | - |
| GWG04_RS07580 (GWG04_07580) | - | 1483516..1483761 (+) | 246 | WP_000122246.1 | hypothetical protein | - |
| GWG04_RS07585 (GWG04_07585) | - | 1483729..1483932 (-) | 204 | Protein_1479 | hypothetical protein | - |
| GWG04_RS07590 (GWG04_07590) | - | 1483948..1484700 (-) | 753 | WP_061735430.1 | phage antirepressor KilAC domain-containing protein | - |
| GWG04_RS07595 (GWG04_07595) | - | 1484857..1485165 (-) | 309 | WP_001153965.1 | hypothetical protein | - |
| GWG04_RS07600 (GWG04_07600) | - | 1485180..1485434 (-) | 255 | WP_001106626.1 | helix-turn-helix transcriptional regulator | - |
| GWG04_RS07605 (GWG04_07605) | - | 1485624..1486262 (+) | 639 | WP_077156086.1 | XRE family transcriptional regulator | - |
| GWG04_RS07610 (GWG04_07610) | - | 1486314..1486814 (+) | 501 | WP_212563489.1 | hypothetical protein | - |
| GWG04_RS07615 (GWG04_07615) | - | 1486875..1488251 (+) | 1377 | WP_046594661.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=418422 GWG04_RS07540 WP_029549393.1 1478226..1478696(-) (ssbA) [Staphylococcus aureus strain SR231]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=418422 GWG04_RS07540 WP_029549393.1 1478226..1478696(-) (ssbA) [Staphylococcus aureus strain SR231]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |