Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SALIVB_RS07960 Genome accession   NC_015760
Coordinates   1752221..1752919 (-) Length   232 a.a.
NCBI ID   WP_013991034.1    Uniprot ID   A0AAP3Q627
Organism   Streptococcus salivarius CCHSS3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747221..1757919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS07945 (SALIVB_1658) - 1748032..1748577 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  SALIVB_RS07950 (SALIVB_1659) - 1748643..1749905 (-) 1263 WP_013991032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SALIVB_RS07955 (SALIVB_1660) comEC/celB 1749991..1752231 (-) 2241 WP_013991033.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SALIVB_RS07960 (SALIVB_1661) comEA 1752221..1752919 (-) 699 WP_013991034.1 helix-hairpin-helix domain-containing protein Machinery gene
  SALIVB_RS07965 (SALIVB_1662) - 1753027..1753782 (-) 756 WP_013991035.1 lysophospholipid acyltransferase family protein -
  SALIVB_RS07970 (SALIVB_1663) - 1753912..1754847 (+) 936 WP_041817390.1 polysaccharide deacetylase family protein -
  SALIVB_RS07975 (SALIVB_1664) - 1754897..1755661 (+) 765 WP_013991037.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SALIVB_RS07980 (SALIVB_1665) - 1755665..1755934 (+) 270 WP_013991038.1 GIY-YIG nuclease family protein -
  SALIVB_RS07985 (SALIVB_1666) - 1755990..1757576 (-) 1587 WP_004183188.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24503.36 Da        Isoelectric Point: 4.4966

>NTDB_id=41837 SALIVB_RS07960 WP_013991034.1 1752221..1752919(-) (comEA) [Streptococcus salivarius CCHSS3]
MKEKILAYVKDNCLFVSVIAVLMVIFCFFLWMTYCAGNSMEAETSYTDVTALSTSSSSKQSSQSLSEASSQSKTEGSEKD
ESKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVVYVATKDENLSVLGQSGTGQVSDK
GGQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSIDDLKNVSGIGEKTLDKIRESLYVA

Nucleotide


Download         Length: 699 bp        

>NTDB_id=41837 SALIVB_RS07960 WP_013991034.1 1752221..1752919(-) (comEA) [Streptococcus salivarius CCHSS3]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATTGTCTGTTTGTGAGTGTTATTGCTGTACTGATGGTGATTTTTTG
CTTCTTCCTATGGATGACTTACTGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCCTCCTCCAAACAAAGCTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGAT
GAGTCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGCTAATCCGGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGAC
TGATGCCATCAAAGCCGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAACTTAGCTGCAAGCTTGTCAGACG
AAGAGGTTGTCTATGTGGCAACTAAGGATGAAAACCTCTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTCTCTGATAAA
GGAGGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGGAGTTGCAAACCATTTCTGGGAT
TGGAGCTAAGCGTGCTGAGGATATCATTGCCTATCGTGAAAGTCATGGTGGCTTTCAATCCATAGATGACTTGAAAAATG
TCTCAGGAATTGGTGAAAAAACTTTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-229)

SLBB domain (SLBB)

(86-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

87.5

100

0.875
  comEA/celA/cilE Streptococcus mitis SK321

40

99.138

0.397
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.565

99.138

0.392

Multiple sequence alignment