Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GV831_RS10200 | Genome accession | NZ_CP047891 |
| Coordinates | 2057775..2058275 (+) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain WHH2311 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2035657..2060056 | 2057775..2058275 | within | 0 |
Gene organization within MGE regions
Location: 2035657..2060056
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GV831_RS10035 (GV831_09990) | - | 2035657..2035965 (-) | 309 | WP_043991183.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| GV831_RS10040 (GV831_09995) | - | 2036068..2036397 (-) | 330 | WP_043991182.1 | hypothetical protein | - |
| GV831_RS10045 (GV831_10000) | - | 2036611..2037201 (-) | 591 | WP_014570849.1 | HK97 family phage prohead protease | - |
| GV831_RS10050 (GV831_10005) | - | 2037210..2037818 (-) | 609 | WP_014570848.1 | hypothetical protein | - |
| GV831_RS10055 (GV831_10010) | - | 2037844..2038026 (-) | 183 | WP_003131978.1 | hypothetical protein | - |
| GV831_RS10060 (GV831_10015) | - | 2038236..2039870 (-) | 1635 | WP_014570847.1 | phage/plasmid primase, P4 family | - |
| GV831_RS10065 (GV831_10020) | - | 2039881..2040675 (-) | 795 | WP_014570846.1 | bifunctional DNA primase/polymerase | - |
| GV831_RS10070 (GV831_10025) | - | 2040679..2041008 (-) | 330 | WP_014570845.1 | hypothetical protein | - |
| GV831_RS10075 (GV831_10030) | - | 2041005..2041316 (-) | 312 | WP_014570844.1 | hypothetical protein | - |
| GV831_RS10080 (GV831_10035) | - | 2041313..2041567 (-) | 255 | WP_058207065.1 | hypothetical protein | - |
| GV831_RS10085 (GV831_10040) | - | 2041564..2041803 (-) | 240 | WP_014570843.1 | hypothetical protein | - |
| GV831_RS10090 (GV831_10045) | - | 2041846..2042127 (-) | 282 | WP_014570842.1 | hypothetical protein | - |
| GV831_RS10095 (GV831_10050) | - | 2042139..2042564 (-) | 426 | WP_014570841.1 | hypothetical protein | - |
| GV831_RS10100 (GV831_10055) | - | 2042569..2042763 (-) | 195 | WP_011677056.1 | DUF1655 domain-containing protein | - |
| GV831_RS10105 (GV831_10060) | - | 2042882..2043067 (-) | 186 | WP_014570840.1 | helix-turn-helix domain-containing protein | - |
| GV831_RS10110 (GV831_10065) | - | 2043145..2043963 (+) | 819 | WP_043991180.1 | TIGR02391 family protein | - |
| GV831_RS10115 (GV831_10070) | - | 2044148..2044393 (-) | 246 | WP_080554629.1 | hypothetical protein | - |
| GV831_RS10120 (GV831_10075) | - | 2044397..2044594 (-) | 198 | WP_014570838.1 | hypothetical protein | - |
| GV831_RS10125 (GV831_10080) | - | 2044852..2045235 (+) | 384 | WP_014570837.1 | helix-turn-helix domain-containing protein | - |
| GV831_RS10130 (GV831_10085) | - | 2045247..2045798 (+) | 552 | WP_014570836.1 | hypothetical protein | - |
| GV831_RS10135 (GV831_10090) | - | 2045812..2046006 (+) | 195 | WP_014570835.1 | hypothetical protein | - |
| GV831_RS10140 (GV831_10095) | - | 2046244..2046552 (+) | 309 | WP_232626158.1 | hypothetical protein | - |
| GV831_RS10145 (GV831_10100) | - | 2048148..2048297 (+) | 150 | WP_153915400.1 | hypothetical protein | - |
| GV831_RS10150 (GV831_10105) | - | 2048420..2048614 (+) | 195 | WP_003131963.1 | hypothetical protein | - |
| GV831_RS10155 (GV831_10110) | - | 2049152..2050336 (+) | 1185 | WP_003131962.1 | site-specific integrase | - |
| GV831_RS10160 (GV831_10115) | - | 2050626..2051072 (+) | 447 | WP_003131961.1 | hypothetical protein | - |
| GV831_RS10165 (GV831_10120) | - | 2051160..2051432 (-) | 273 | WP_003131960.1 | chorismate mutase | - |
| GV831_RS10170 (GV831_10125) | - | 2051516..2052004 (+) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| GV831_RS10175 (GV831_10130) | - | 2052035..2052676 (+) | 642 | WP_003131958.1 | phosphotransferase | - |
| GV831_RS10180 (GV831_10135) | dnaX | 2052725..2054383 (+) | 1659 | WP_003131957.1 | DNA polymerase III subunit gamma/tau | - |
| GV831_RS10185 (GV831_10140) | - | 2054418..2055883 (-) | 1466 | Protein_1972 | amino acid permease | - |
| GV831_RS10190 (GV831_10145) | - | 2056406..2057260 (+) | 855 | WP_003131955.1 | undecaprenyl-diphosphate phosphatase | - |
| GV831_RS10195 (GV831_10150) | rpsF | 2057452..2057745 (+) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| GV831_RS10200 (GV831_10155) | ssb | 2057775..2058275 (+) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| GV831_RS10205 (GV831_10160) | rpsR | 2058448..2058693 (+) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| GV831_RS10210 (GV831_10165) | - | 2058893..2059666 (+) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| GV831_RS10215 (GV831_10170) | - | 2059748..2060056 (-) | 309 | WP_014570833.1 | DUF960 domain-containing protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=418349 GV831_RS10200 WP_003131953.1 2057775..2058275(+) (ssb) [Lactococcus lactis subsp. lactis strain WHH2311]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=418349 GV831_RS10200 WP_003131953.1 2057775..2058275(+) (ssb) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |