Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GV831_RS01065 Genome accession   NZ_CP047891
Coordinates   207653..208642 (+) Length   329 a.a.
NCBI ID   WP_198493813.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WHH2311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202653..213642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV831_RS01045 (GV831_01035) - 202727..203563 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  GV831_RS01050 (GV831_01040) - 203870..205291 (+) 1422 WP_003130403.1 NCS2 family permease -
  GV831_RS01055 (GV831_01045) - 205483..206331 (+) 849 WP_003130404.1 alpha/beta hydrolase -
  GV831_RS01060 (GV831_01050) - 206493..207578 (+) 1086 WP_003130405.1 YdcF family protein -
  GV831_RS01065 (GV831_01055) coiA 207653..208642 (+) 990 WP_198493813.1 competence protein CoiA Machinery gene
  GV831_RS01070 (GV831_01060) pepF 208705..210510 (+) 1806 WP_003132689.1 oligoendopeptidase F Regulator
  GV831_RS01075 (GV831_01065) - 210513..211196 (+) 684 WP_010906108.1 O-methyltransferase -
  GV831_RS01080 (GV831_01070) - 211350..212276 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39426.02 Da        Isoelectric Point: 8.5218

>NTDB_id=418325 GV831_RS01065 WP_198493813.1 207653..208642(+) (coiA) [Lactococcus lactis subsp. lactis strain WHH2311]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKIQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=418325 GV831_RS01065 WP_198493813.1 207653..208642(+) (coiA) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAAATTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426

Multiple sequence alignment