Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S59_RS13930 | Genome accession | NZ_CP047867 |
| Coordinates | 2817102..2817572 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_419 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2795762..2822618 | 2817102..2817572 | within | 0 |
Gene organization within MGE regions
Location: 2795762..2822618
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S59_RS13785 (E3S59_13785) | groES | 2795762..2796046 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S59_RS13790 (E3S59_13790) | groL | 2796122..2797738 (+) | 1617 | WP_000240655.1 | chaperonin GroEL | - |
| E3S59_RS13795 (E3S59_13795) | - | 2798278..2799585 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| E3S59_RS13800 (E3S59_13800) | - | 2800029..2801252 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3S59_RS13805 (E3S59_13805) | lukH | 2801688..2802743 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3S59_RS13810 (E3S59_13810) | lukG | 2802765..2803781 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3S59_RS13815 (E3S59_13815) | sph | 2804019..2804843 (-) | 825 | Protein_2679 | sphingomyelin phosphodiesterase | - |
| E3S59_RS13820 (E3S59_13820) | - | 2804900..2805937 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3S59_RS13825 (E3S59_13825) | - | 2806000..2806242 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3S59_RS13830 (E3S59_13830) | - | 2806253..2807236 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3S59_RS13835 (E3S59_13835) | - | 2807336..2807518 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3S59_RS13840 (E3S59_13840) | - | 2807722..2808063 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S59_RS13845 (E3S59_13845) | - | 2808069..2809001 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S59_RS13850 (E3S59_13850) | - | 2809017..2809730 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S59_RS13855 (E3S59_13855) | - | 2809693..2809867 (+) | 175 | Protein_2687 | transcriptional regulator | - |
| E3S59_RS13860 (E3S59_13860) | - | 2809864..2810127 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3S59_RS13865 (E3S59_13865) | - | 2810143..2810358 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S59_RS13870 (E3S59_13870) | - | 2810347..2810676 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3S59_RS13875 (E3S59_13875) | - | 2810727..2811479 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S59_RS13880 (E3S59_13880) | - | 2811495..2811692 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3S59_RS13885 (E3S59_13885) | - | 2811679..2812059 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S59_RS13890 (E3S59_13890) | - | 2812114..2812437 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S59_RS13895 (E3S59_13895) | - | 2812434..2812595 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S59_RS13900 (E3S59_13900) | - | 2812690..2812992 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S59_RS13905 (E3S59_13905) | - | 2812997..2813257 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S59_RS13910 (E3S59_13910) | - | 2813266..2813529 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S59_RS13915 (E3S59_13915) | - | 2813538..2815481 (+) | 1944 | WP_160195539.1 | AAA family ATPase | - |
| E3S59_RS13920 (E3S59_13920) | - | 2815483..2816403 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3S59_RS13925 (E3S59_13925) | - | 2816484..2817101 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3S59_RS13930 (E3S59_13930) | ssbA | 2817102..2817572 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S59_RS13935 (E3S59_13935) | - | 2817602..2818495 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3S59_RS13940 (E3S59_13940) | - | 2818502..2818720 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S59_RS13945 (E3S59_13945) | - | 2818729..2819133 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S59_RS13950 (E3S59_13950) | - | 2819146..2819517 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S59_RS13955 (E3S59_13955) | - | 2819517..2819774 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3S59_RS13960 (E3S59_13960) | - | 2819777..2820019 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S59_RS13965 (E3S59_13965) | - | 2820034..2820279 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3S59_RS13970 (E3S59_13970) | - | 2820276..2820812 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3S59_RS13975 (E3S59_13975) | - | 2820849..2821094 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S59_RS13980 (E3S59_13980) | - | 2821091..2821297 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S59_RS13985 (E3S59_13985) | rinB | 2821294..2821443 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S59_RS13990 (E3S59_13990) | - | 2821443..2821643 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S59_RS13995 (E3S59_13995) | - | 2821671..2822087 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S59_RS14000 (E3S59_14000) | - | 2822319..2822618 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=418174 E3S59_RS13930 WP_000934759.1 2817102..2817572(+) (ssbA) [Staphylococcus aureus strain UP_419]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=418174 E3S59_RS13930 WP_000934759.1 2817102..2817572(+) (ssbA) [Staphylococcus aureus strain UP_419]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |