Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SALIVB_RS02805 Genome accession   NC_015760
Coordinates   544366..546336 (+) Length   656 a.a.
NCBI ID   WP_013990223.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 539366..551336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02780 (SALIVB_0561) - 540087..540662 (-) 576 WP_013990218.1 CYTH domain-containing protein -
  SALIVB_RS02785 (SALIVB_0562) - 540758..541432 (+) 675 WP_013990219.1 GTP pyrophosphokinase family protein -
  SALIVB_RS02790 (SALIVB_0563) - 541404..542240 (+) 837 WP_041817193.1 NAD kinase -
  SALIVB_RS02795 (SALIVB_0564) - 542237..543133 (+) 897 WP_013990221.1 RluA family pseudouridine synthase -
  SALIVB_RS02800 (SALIVB_0565) pta 543147..544130 (+) 984 WP_013990222.1 phosphate acetyltransferase -
  SALIVB_RS02805 (SALIVB_0566) amiA 544366..546336 (+) 1971 WP_013990223.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVB_RS02810 (SALIVB_0567) amiA 546518..548488 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVB_RS02815 (SALIVB_0568) amiC 548549..550042 (+) 1494 WP_013990225.1 ABC transporter permease Regulator
  SALIVB_RS02820 (SALIVB_0569) amiD 550042..550968 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71892.82 Da        Isoelectric Point: 4.9751

>NTDB_id=41813 SALIVB_RS02805 WP_013990223.1 544366..546336(+) (amiA) [Streptococcus salivarius CCHSS3]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQSYKFSAKKS
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=41813 SALIVB_RS02805 WP_013990223.1 544366..546336(+) (amiA) [Streptococcus salivarius CCHSS3]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACTTTAGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAATGGTGTAGATGGTCTTATGGAAGCTGATAAATATGGGAACCTTGTTCCTTCTGTAGCT
GAAGATTGGTCAGTTTCTCAAGATGGTCTTACCTATACCTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAATTCTAAGACAACCTATGGTTTGCT
CTTCCCGGTTAACGAAGACTTTCTTAAGAATAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTTTATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAGGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTCAAAGCTATAAATTCTCAGCTAAGAAGTCA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTTAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTCGGTGACCTTGTGACAGAGAAAATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCAGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGCAGTGAAAATGTCGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCTACTCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCACTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.884

100

0.959
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment