Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SALIVB_RS02820 Genome accession   NC_015760
Coordinates   550042..550968 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   A0A0F3HAC7
Organism   Streptococcus salivarius CCHSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 545042..555968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02810 (SALIVB_0567) amiA 546518..548488 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  SALIVB_RS02815 (SALIVB_0568) amiC 548549..550042 (+) 1494 WP_013990225.1 ABC transporter permease Regulator
  SALIVB_RS02820 (SALIVB_0569) amiD 550042..550968 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVB_RS02825 (SALIVB_0570) amiE 550978..552063 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS02830 (SALIVB_0571) amiF 552056..552985 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  SALIVB_RS02835 (SALIVB_0572) - 553034..553819 (-) 786 WP_013990228.1 hypothetical protein -
  SALIVB_RS02840 (SALIVB_0573) - 553831..554529 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  SALIVB_RS02845 (SALIVB_0574) - 554534..554911 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  SALIVB_RS02850 (SALIVB_0575) - 555093..555887 (+) 795 WP_013990229.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=41816 SALIVB_RS02820 WP_002886846.1 550042..550968(+) (amiD) [Streptococcus salivarius CCHSS3]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=41816 SALIVB_RS02820 WP_002886846.1 550042..550968(+) (amiD) [Streptococcus salivarius CCHSS3]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGGATCTTGATTGCCATCG
TTTTGATGAGTTTTATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAATGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTCATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
CATTCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTAACTATGGCTAGTCAACTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATTCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974

Multiple sequence alignment