Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SALIVB_RS02830 Genome accession   NC_015760
Coordinates   552056..552985 (+) Length   309 a.a.
NCBI ID   WP_002886847.1    Uniprot ID   A0AB37CQR1
Organism   Streptococcus salivarius CCHSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 547056..557985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS02815 (SALIVB_0568) amiC 548549..550042 (+) 1494 WP_013990225.1 ABC transporter permease Regulator
  SALIVB_RS02820 (SALIVB_0569) amiD 550042..550968 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  SALIVB_RS02825 (SALIVB_0570) amiE 550978..552063 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS02830 (SALIVB_0571) amiF 552056..552985 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  SALIVB_RS02835 (SALIVB_0572) - 553034..553819 (-) 786 WP_013990228.1 hypothetical protein -
  SALIVB_RS02840 (SALIVB_0573) - 553831..554529 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  SALIVB_RS02845 (SALIVB_0574) - 554534..554911 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  SALIVB_RS02850 (SALIVB_0575) - 555093..555887 (+) 795 WP_013990229.1 HAD-IIB family hydrolase -
  SALIVB_RS02855 (SALIVB_0576) - 555880..556698 (+) 819 WP_013990230.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35032.08 Da        Isoelectric Point: 6.5101

>NTDB_id=41818 SALIVB_RS02830 WP_002886847.1 552056..552985(+) (amiF) [Streptococcus salivarius CCHSS3]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=41818 SALIVB_RS02830 WP_002886847.1 552056..552985(+) (amiF) [Streptococcus salivarius CCHSS3]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGA
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAGATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.706

100

0.987
  amiF Streptococcus thermophilus LMD-9

98.382

100

0.984

Multiple sequence alignment