Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S63_RS13965 | Genome accession | NZ_CP047863 |
| Coordinates | 2813702..2814172 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_1106 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2796629..2819218 | 2813702..2814172 | within | 0 |
Gene organization within MGE regions
Location: 2796629..2819218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S63_RS13835 (E3S63_13835) | - | 2796629..2797852 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3S63_RS13840 (E3S63_13840) | lukH | 2798288..2799343 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3S63_RS13845 (E3S63_13845) | lukG | 2799365..2800381 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3S63_RS13850 (E3S63_13850) | sph | 2800619..2801443 (-) | 825 | Protein_2687 | sphingomyelin phosphodiesterase | - |
| E3S63_RS13855 (E3S63_13855) | - | 2801500..2802537 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3S63_RS13860 (E3S63_13860) | - | 2802600..2802842 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3S63_RS13865 (E3S63_13865) | - | 2802853..2803836 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3S63_RS13870 (E3S63_13870) | - | 2803936..2804118 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3S63_RS13875 (E3S63_13875) | - | 2804322..2804663 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S63_RS13880 (E3S63_13880) | - | 2804669..2805601 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S63_RS13885 (E3S63_13885) | - | 2805617..2806330 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S63_RS13890 (E3S63_13890) | - | 2806293..2806467 (+) | 175 | Protein_2695 | transcriptional regulator | - |
| E3S63_RS13895 (E3S63_13895) | - | 2806464..2806727 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3S63_RS13900 (E3S63_13900) | - | 2806743..2806958 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S63_RS13905 (E3S63_13905) | - | 2806947..2807276 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3S63_RS13910 (E3S63_13910) | - | 2807327..2808079 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S63_RS13915 (E3S63_13915) | - | 2808095..2808292 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3S63_RS13920 (E3S63_13920) | - | 2808279..2808659 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S63_RS13925 (E3S63_13925) | - | 2808714..2809037 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S63_RS13930 (E3S63_13930) | - | 2809034..2809195 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S63_RS13935 (E3S63_13935) | - | 2809290..2809592 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S63_RS13940 (E3S63_13940) | - | 2809597..2809857 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S63_RS13945 (E3S63_13945) | - | 2809866..2810129 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S63_RS13950 (E3S63_13950) | - | 2810138..2812081 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| E3S63_RS13955 (E3S63_13955) | - | 2812083..2813003 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3S63_RS13960 (E3S63_13960) | - | 2813084..2813701 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3S63_RS13965 (E3S63_13965) | ssbA | 2813702..2814172 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S63_RS13970 (E3S63_13970) | - | 2814202..2815095 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3S63_RS13975 (E3S63_13975) | - | 2815102..2815320 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S63_RS13980 (E3S63_13980) | - | 2815329..2815733 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S63_RS13985 (E3S63_13985) | - | 2815746..2816117 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S63_RS13990 (E3S63_13990) | - | 2816117..2816374 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3S63_RS13995 (E3S63_13995) | - | 2816377..2816619 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S63_RS14000 (E3S63_14000) | - | 2816634..2816879 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3S63_RS14005 (E3S63_14005) | - | 2816876..2817412 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3S63_RS14010 (E3S63_14010) | - | 2817449..2817694 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S63_RS14015 (E3S63_14015) | - | 2817691..2817897 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S63_RS14020 (E3S63_14020) | rinB | 2817894..2818043 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S63_RS14025 (E3S63_14025) | - | 2818043..2818243 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S63_RS14030 (E3S63_14030) | - | 2818271..2818687 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S63_RS14035 (E3S63_14035) | - | 2818919..2819218 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=418087 E3S63_RS13965 WP_000934759.1 2813702..2814172(+) (ssbA) [Staphylococcus aureus strain UP_1106]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=418087 E3S63_RS13965 WP_000934759.1 2813702..2814172(+) (ssbA) [Staphylococcus aureus strain UP_1106]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |