Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S64_RS04765 | Genome accession | NZ_CP047861 |
| Coordinates | 950921..951391 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_1322 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 918505..961080 | 950921..951391 | within | 0 |
Gene organization within MGE regions
Location: 918505..961080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S64_RS04540 (E3S64_04540) | - | 918505..918960 (-) | 456 | WP_000971220.1 | hypothetical protein | - |
| E3S64_RS04545 (E3S64_04545) | - | 918957..919544 (-) | 588 | WP_000448197.1 | hypothetical protein | - |
| E3S64_RS04550 (E3S64_04550) | sak | 920080..920571 (-) | 492 | WP_000920042.1 | staphylokinase | - |
| E3S64_RS04555 (E3S64_04555) | - | 920762..921517 (-) | 756 | WP_002955266.1 | CHAP domain-containing protein | - |
| E3S64_RS04560 (E3S64_04560) | - | 921529..921783 (-) | 255 | WP_000611512.1 | phage holin | - |
| E3S64_RS04565 (E3S64_04565) | - | 921841..922236 (-) | 396 | WP_000398891.1 | hypothetical protein | - |
| E3S64_RS04570 (E3S64_04570) | - | 922242..923480 (-) | 1239 | WP_160199659.1 | BppU family phage baseplate upper protein | - |
| E3S64_RS04575 (E3S64_04575) | - | 923493..925391 (-) | 1899 | WP_000524015.1 | glucosaminidase domain-containing protein | - |
| E3S64_RS04580 (E3S64_04580) | - | 925528..925827 (-) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| E3S64_RS04585 (E3S64_04585) | - | 925867..926040 (-) | 174 | WP_000782200.1 | XkdX family protein | - |
| E3S64_RS04590 (E3S64_04590) | - | 926044..926421 (-) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| E3S64_RS04595 (E3S64_04595) | - | 926421..928244 (-) | 1824 | WP_000634521.1 | phage baseplate upper protein | - |
| E3S64_RS04600 (E3S64_04600) | - | 928244..930154 (-) | 1911 | WP_042856098.1 | hypothetical protein | - |
| E3S64_RS04605 (E3S64_04605) | - | 930169..932070 (-) | 1902 | WP_160199660.1 | SGNH/GDSL hydrolase family protein | - |
| E3S64_RS04610 (E3S64_04610) | - | 932079..933026 (-) | 948 | WP_160199661.1 | phage tail family protein | - |
| E3S64_RS04615 (E3S64_04615) | - | 933039..936503 (-) | 3465 | WP_103146790.1 | hypothetical protein | - |
| E3S64_RS04620 (E3S64_04620) | - | 936520..936864 (-) | 345 | WP_000105584.1 | hypothetical protein | - |
| E3S64_RS04625 (E3S64_04625) | - | 936894..937259 (-) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| E3S64_RS04630 (E3S64_04630) | - | 937322..937903 (-) | 582 | WP_000002578.1 | phage major tail protein, TP901-1 family | - |
| E3S64_RS04635 (E3S64_04635) | - | 937922..938305 (-) | 384 | WP_000188643.1 | hypothetical protein | - |
| E3S64_RS04640 (E3S64_04640) | - | 938317..938664 (-) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| E3S64_RS04645 (E3S64_04645) | - | 938664..938966 (-) | 303 | WP_001268314.1 | hypothetical protein | - |
| E3S64_RS04650 (E3S64_04650) | - | 938963..939295 (-) | 333 | WP_000209972.1 | phage head-tail connector protein | - |
| E3S64_RS04655 (E3S64_04655) | - | 939304..939591 (-) | 288 | WP_001114086.1 | hypothetical protein | - |
| E3S64_RS04660 (E3S64_04660) | - | 939613..940587 (-) | 975 | WP_000438511.1 | phage major capsid protein | - |
| E3S64_RS04665 (E3S64_04665) | - | 940601..941215 (-) | 615 | WP_000354305.1 | DUF4355 domain-containing protein | - |
| E3S64_RS04670 (E3S64_04670) | - | 941350..941520 (-) | 171 | WP_000072207.1 | hypothetical protein | - |
| E3S64_RS04675 (E3S64_04675) | - | 941593..942588 (-) | 996 | WP_001133043.1 | minor capsid protein | - |
| E3S64_RS04680 (E3S64_04680) | - | 942595..944130 (-) | 1536 | WP_000921883.1 | phage portal protein | - |
| E3S64_RS04685 (E3S64_04685) | - | 944141..945418 (-) | 1278 | WP_009560330.1 | PBSX family phage terminase large subunit | - |
| E3S64_RS04690 (E3S64_04690) | - | 945405..945845 (-) | 441 | WP_009560332.1 | terminase small subunit | - |
| E3S64_RS04695 (E3S64_04695) | - | 946033..946455 (-) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| E3S64_RS04700 (E3S64_04700) | - | 946479..946625 (-) | 147 | WP_009560343.1 | hypothetical protein | - |
| E3S64_RS04705 (E3S64_04705) | rinB | 946626..946799 (-) | 174 | WP_064128247.1 | transcriptional activator RinB | - |
| E3S64_RS04710 (E3S64_04710) | - | 946802..947002 (-) | 201 | WP_001125016.1 | hypothetical protein | - |
| E3S64_RS04715 (E3S64_04715) | - | 946977..947165 (-) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| E3S64_RS04720 (E3S64_04720) | - | 947202..947732 (-) | 531 | WP_000185662.1 | dUTPase | - |
| E3S64_RS04725 (E3S64_04725) | - | 947725..947973 (-) | 249 | WP_160199662.1 | DUF1024 family protein | - |
| E3S64_RS04730 (E3S64_04730) | - | 947966..948331 (-) | 366 | WP_031765535.1 | hypothetical protein | - |
| E3S64_RS04735 (E3S64_04735) | - | 948328..948729 (-) | 402 | WP_000695766.1 | hypothetical protein | - |
| E3S64_RS04740 (E3S64_04740) | - | 948742..948984 (-) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S64_RS04745 (E3S64_04745) | - | 948988..949356 (-) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S64_RS04750 (E3S64_04750) | - | 949369..949773 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S64_RS04755 (E3S64_04755) | - | 949782..950000 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S64_RS04760 (E3S64_04760) | - | 950007..950891 (-) | 885 | WP_000148301.1 | DnaD domain protein | - |
| E3S64_RS04765 (E3S64_04765) | ssbA | 950921..951391 (-) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S64_RS04770 (E3S64_04770) | - | 951392..952009 (-) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| E3S64_RS04775 (E3S64_04775) | - | 952090..953010 (-) | 921 | WP_000138481.1 | recombinase RecT | - |
| E3S64_RS04780 (E3S64_04780) | - | 953012..954955 (-) | 1944 | WP_000700562.1 | AAA family ATPase | - |
| E3S64_RS04785 (E3S64_04785) | - | 954964..955227 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S64_RS04790 (E3S64_04790) | - | 955236..955496 (-) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| E3S64_RS04795 (E3S64_04795) | - | 955590..955751 (-) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| E3S64_RS14635 | - | 955744..955872 (-) | 129 | WP_001559112.1 | hypothetical protein | - |
| E3S64_RS04800 (E3S64_04800) | - | 955931..956161 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| E3S64_RS14490 | - | 956136..956312 (-) | 177 | WP_001094935.1 | hypothetical protein | - |
| E3S64_RS04805 (E3S64_04805) | - | 956365..956559 (-) | 195 | WP_000390105.1 | hypothetical protein | - |
| E3S64_RS04810 (E3S64_04810) | - | 956576..957364 (-) | 789 | WP_001148566.1 | phage antirepressor | - |
| E3S64_RS04815 (E3S64_04815) | - | 957380..957598 (-) | 219 | WP_001198672.1 | helix-turn-helix transcriptional regulator | - |
| E3S64_RS04820 (E3S64_04820) | - | 957740..958459 (+) | 720 | WP_000358224.1 | XRE family transcriptional regulator | - |
| E3S64_RS04825 (E3S64_04825) | - | 958495..959427 (+) | 933 | WP_000392186.1 | hypothetical protein | - |
| E3S64_RS04830 (E3S64_04830) | - | 959407..959586 (-) | 180 | WP_000337826.1 | hypothetical protein | - |
| E3S64_RS04835 (E3S64_04835) | - | 959695..961080 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=418021 E3S64_RS04765 WP_000934770.1 950921..951391(-) (ssbA) [Staphylococcus aureus strain UP_1322]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=418021 E3S64_RS04765 WP_000934770.1 950921..951391(-) (ssbA) [Staphylococcus aureus strain UP_1322]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |