Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S68_RS14260 | Genome accession | NZ_CP047854 |
| Coordinates | 2857587..2858057 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_1525 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2833280..2863103 | 2857587..2858057 | within | 0 |
Gene organization within MGE regions
Location: 2833280..2863103
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S68_RS14100 (E3S68_14100) | - | 2833280..2833906 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| E3S68_RS14105 (E3S68_14105) | - | 2834103..2835362 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| E3S68_RS14110 (E3S68_14110) | mroQ | 2835387..2836130 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| E3S68_RS14115 (E3S68_14115) | groES | 2836305..2836589 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S68_RS14120 (E3S68_14120) | groL | 2836665..2838281 (+) | 1617 | WP_000240655.1 | chaperonin GroEL | - |
| E3S68_RS14125 (E3S68_14125) | - | 2838821..2840128 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| E3S68_RS14130 (E3S68_14130) | - | 2840514..2841737 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3S68_RS14135 (E3S68_14135) | lukH | 2842173..2843228 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3S68_RS14140 (E3S68_14140) | lukG | 2843250..2844266 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3S68_RS14145 (E3S68_14145) | sph | 2844504..2845328 (-) | 825 | Protein_2750 | sphingomyelin phosphodiesterase | - |
| E3S68_RS14150 (E3S68_14150) | - | 2845385..2846422 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3S68_RS14155 (E3S68_14155) | - | 2846485..2846727 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3S68_RS14160 (E3S68_14160) | - | 2846738..2847721 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3S68_RS14165 (E3S68_14165) | - | 2847821..2848003 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3S68_RS14170 (E3S68_14170) | - | 2848207..2848548 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S68_RS14175 (E3S68_14175) | - | 2848554..2849486 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S68_RS14180 (E3S68_14180) | - | 2849502..2850215 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S68_RS14185 (E3S68_14185) | - | 2850178..2850352 (+) | 175 | Protein_2758 | transcriptional regulator | - |
| E3S68_RS14190 (E3S68_14190) | - | 2850349..2850612 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3S68_RS14195 (E3S68_14195) | - | 2850628..2850843 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S68_RS14200 (E3S68_14200) | - | 2850832..2851161 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3S68_RS14205 (E3S68_14205) | - | 2851212..2851964 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S68_RS14210 (E3S68_14210) | - | 2851980..2852177 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3S68_RS14215 (E3S68_14215) | - | 2852164..2852544 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S68_RS14220 (E3S68_14220) | - | 2852599..2852922 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S68_RS14225 (E3S68_14225) | - | 2852919..2853080 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S68_RS14230 (E3S68_14230) | - | 2853175..2853477 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S68_RS14235 (E3S68_14235) | - | 2853482..2853742 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S68_RS14240 (E3S68_14240) | - | 2853751..2854014 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S68_RS14245 (E3S68_14245) | - | 2854023..2855966 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| E3S68_RS14250 (E3S68_14250) | - | 2855968..2856888 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3S68_RS14255 (E3S68_14255) | - | 2856969..2857586 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3S68_RS14260 (E3S68_14260) | ssbA | 2857587..2858057 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S68_RS14265 (E3S68_14265) | - | 2858087..2858980 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3S68_RS14270 (E3S68_14270) | - | 2858987..2859205 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S68_RS14275 (E3S68_14275) | - | 2859214..2859618 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S68_RS14280 (E3S68_14280) | - | 2859631..2860002 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S68_RS14285 (E3S68_14285) | - | 2860002..2860259 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3S68_RS14290 (E3S68_14290) | - | 2860262..2860504 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S68_RS14295 (E3S68_14295) | - | 2860519..2860764 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3S68_RS14300 (E3S68_14300) | - | 2860761..2861297 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3S68_RS14305 (E3S68_14305) | - | 2861334..2861579 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S68_RS14310 (E3S68_14310) | - | 2861576..2861782 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S68_RS14315 (E3S68_14315) | rinB | 2861779..2861928 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S68_RS14320 (E3S68_14320) | - | 2861928..2862128 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S68_RS14325 (E3S68_14325) | - | 2862156..2862572 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S68_RS14330 (E3S68_14330) | - | 2862804..2863103 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=417911 E3S68_RS14260 WP_000934759.1 2857587..2858057(+) (ssbA) [Staphylococcus aureus strain UP_1525]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417911 E3S68_RS14260 WP_000934759.1 2857587..2858057(+) (ssbA) [Staphylococcus aureus strain UP_1525]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |