Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S71_RS08300 | Genome accession | NZ_CP047852 |
| Coordinates | 1647969..1648472 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UP_274 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1627072..1649224 | 1647969..1648472 | within | 0 |
Gene organization within MGE regions
Location: 1627072..1649224
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S71_RS08140 (E3S71_08140) | - | 1627072..1627326 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| E3S71_RS08145 (E3S71_08145) | - | 1627626..1627889 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| E3S71_RS08150 (E3S71_08150) | - | 1628027..1628599 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| E3S71_RS08155 (E3S71_08155) | - | 1628780..1629148 (-) | 369 | WP_000849174.1 | YxeA family protein | - |
| E3S71_RS08160 (E3S71_08160) | selX | 1629517..1630128 (-) | 612 | WP_000473944.1 | staphylococcal enterotoxin-like toxin X | - |
| E3S71_RS13905 | - | 1630334..1631046 (+) | 713 | Protein_1553 | tyrosine-type recombinase/integrase | - |
| E3S71_RS08175 (E3S71_08175) | - | 1631085..1632023 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| E3S71_RS08180 (E3S71_08180) | - | 1632569..1632826 (-) | 258 | WP_000877056.1 | hypothetical protein | - |
| E3S71_RS08185 (E3S71_08185) | - | 1633358..1633915 (+) | 558 | WP_001035617.1 | DUF4888 domain-containing protein | - |
| E3S71_RS08190 (E3S71_08190) | seb | 1633993..1634793 (-) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| E3S71_RS08195 (E3S71_08195) | - | 1635101..1635670 (-) | 570 | WP_160199905.1 | terminase small subunit | - |
| E3S71_RS08200 (E3S71_08200) | - | 1635667..1636008 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| E3S71_RS08205 (E3S71_08205) | - | 1636011..1636538 (-) | 528 | WP_160199906.1 | spore coat protein | - |
| E3S71_RS08210 (E3S71_08210) | - | 1636591..1637244 (-) | 654 | WP_000214169.1 | hypothetical protein | - |
| E3S71_RS08215 (E3S71_08215) | - | 1637275..1637616 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| E3S71_RS08220 (E3S71_08220) | - | 1638152..1638793 (-) | 642 | WP_001019288.1 | hypothetical protein | - |
| E3S71_RS08225 (E3S71_08225) | - | 1638795..1639058 (-) | 264 | WP_001804819.1 | hypothetical protein | - |
| E3S71_RS08230 (E3S71_08230) | - | 1639060..1639422 (-) | 363 | WP_001039165.1 | hypothetical protein | - |
| E3S71_RS08235 (E3S71_08235) | - | 1639701..1641170 (-) | 1470 | WP_031928070.1 | virulence-associated E family protein | - |
| E3S71_RS08240 (E3S71_08240) | - | 1641187..1642056 (-) | 870 | WP_001002727.1 | primase alpha helix C-terminal domain-containing protein | - |
| E3S71_RS08245 (E3S71_08245) | tscT | 1642122..1642442 (-) | 321 | WP_160199907.1 | type II toxin-antitoxin system toxin TscT | - |
| E3S71_RS08250 (E3S71_08250) | - | 1642443..1642826 (-) | 384 | WP_000695070.1 | hypothetical protein | - |
| E3S71_RS08255 (E3S71_08255) | - | 1642828..1643031 (-) | 204 | WP_001231389.1 | hypothetical protein | - |
| E3S71_RS08260 (E3S71_08260) | - | 1642998..1643171 (-) | 174 | WP_072470692.1 | pathogenicity island protein | - |
| E3S71_RS08265 (E3S71_08265) | - | 1643183..1643455 (-) | 273 | WP_001138301.1 | helix-turn-helix domain-containing protein | - |
| E3S71_RS08270 (E3S71_08270) | - | 1643456..1643668 (-) | 213 | WP_000551774.1 | helix-turn-helix domain-containing protein | - |
| E3S71_RS08275 (E3S71_08275) | - | 1643707..1643907 (-) | 201 | WP_001033058.1 | helix-turn-helix transcriptional regulator | - |
| E3S71_RS08280 (E3S71_08280) | - | 1644014..1644937 (+) | 924 | WP_050436923.1 | helix-turn-helix domain-containing protein | - |
| E3S71_RS08285 (E3S71_08285) | - | 1644963..1646180 (+) | 1218 | WP_000270125.1 | tyrosine-type recombinase/integrase | - |
| E3S71_RS08290 (E3S71_08290) | - | 1646663..1647493 (+) | 831 | WP_000357932.1 | KilA-N domain-containing protein | - |
| E3S71_RS08295 (E3S71_08295) | rpsR | 1647675..1647917 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3S71_RS08300 (E3S71_08300) | ssbA | 1647969..1648472 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S71_RS08305 (E3S71_08305) | rpsF | 1648493..1648789 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| E3S71_RS08310 (E3S71_08310) | - | 1649033..1649224 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=417860 E3S71_RS08300 WP_000934799.1 1647969..1648472(-) (ssbA) [Staphylococcus aureus strain UP_274]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=417860 E3S71_RS08300 WP_000934799.1 1647969..1648472(-) (ssbA) [Staphylococcus aureus strain UP_274]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |