Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9206_RS08545 Genome accession   NZ_CP060899
Coordinates   1782435..1783862 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain EC21     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777435..1788862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9206_RS08515 (H9206_08470) yeeZ 1777490..1778314 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H9206_RS08520 (H9206_08475) yeeY 1778360..1779289 (+) 930 WP_063078859.1 LysR substrate-binding domain-containing protein -
  H9206_RS08525 (H9206_08480) yoeI 1779504..1779566 (+) 63 WP_010723108.1 membrane protein YoeI -
  H9206_RS08530 (H9206_08485) plaP 1779556..1780914 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H9206_RS08535 (H9206_08490) tsuA 1781093..1782151 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  H9206_RS08540 (H9206_08495) tsuB 1782165..1782392 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H9206_RS08545 (H9206_08500) sbcB 1782435..1783862 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  H9206_RS08550 (H9206_08505) dacD 1784071..1785237 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H9206_RS08555 (H9206_08510) sbmC 1785356..1785829 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  H9206_RS08560 (H9206_08515) yeeA 1786027..1787085 (+) 1059 WP_001200905.1 FUSC family protein -
  H9206_RS08565 (H9206_08520) tmaR 1787257..1787586 (+) 330 WP_000450409.1 DUF496 family protein -
  H9206_RS08570 (H9206_08525) - 1787687..1787869 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H9206_RS08575 (H9206_08530) - 1787923..1788069 (+) 147 Protein_1679 transposase domain-containing protein -
  H9206_RS08580 (H9206_08535) - 1788358..1788438 (-) 81 Protein_1680 hypothetical protein -
  H9206_RS08585 (H9206_08540) yeeW 1788484..1788678 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=417450 H9206_RS08545 WP_000980570.1 1782435..1783862(-) (sbcB) [Escherichia coli strain EC21]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=417450 H9206_RS08545 WP_000980570.1 1782435..1783862(-) (sbcB) [Escherichia coli strain EC21]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment