Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S92_RS13700 | Genome accession | NZ_CP047833 |
| Coordinates | 2771159..2771629 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain UP_926 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2750636..2776961 | 2771159..2771629 | within | 0 |
Gene organization within MGE regions
Location: 2750636..2776961
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S92_RS13560 (E3S92_13560) | groES | 2750636..2750920 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S92_RS13565 (E3S92_13565) | groL | 2750996..2752612 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3S92_RS13570 (E3S92_13570) | - | 2753144..2754451 (-) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| E3S92_RS13575 (E3S92_13575) | - | 2754847..2756070 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| E3S92_RS13580 (E3S92_13580) | - | 2756500..2757555 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| E3S92_RS13585 (E3S92_13585) | - | 2757577..2758596 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| E3S92_RS13590 (E3S92_13590) | sph | 2758853..2759677 (-) | 825 | Protein_2646 | sphingomyelin phosphodiesterase | - |
| E3S92_RS13595 (E3S92_13595) | - | 2759734..2760771 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| E3S92_RS13600 (E3S92_13600) | - | 2760830..2761294 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3S92_RS13605 (E3S92_13605) | - | 2761394..2761576 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3S92_RS13610 (E3S92_13610) | - | 2761780..2762121 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S92_RS13615 (E3S92_13615) | - | 2762127..2763059 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S92_RS13620 (E3S92_13620) | - | 2763075..2763788 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S92_RS13625 (E3S92_13625) | - | 2763751..2763924 (+) | 174 | WP_031908048.1 | hypothetical protein | - |
| E3S92_RS13630 (E3S92_13630) | - | 2763921..2764184 (+) | 264 | WP_160190248.1 | helix-turn-helix transcriptional regulator | - |
| E3S92_RS13635 (E3S92_13635) | - | 2764200..2764415 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S92_RS13640 (E3S92_13640) | - | 2764404..2764733 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3S92_RS13645 (E3S92_13645) | - | 2764784..2765536 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S92_RS13650 (E3S92_13650) | - | 2765552..2765749 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3S92_RS13655 (E3S92_13655) | - | 2765736..2766116 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| E3S92_RS13660 (E3S92_13660) | - | 2766171..2766494 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S92_RS13665 (E3S92_13665) | - | 2766491..2766652 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S92_RS13670 (E3S92_13670) | - | 2766747..2767049 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S92_RS13675 (E3S92_13675) | - | 2767054..2767314 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S92_RS13680 (E3S92_13680) | - | 2767323..2767586 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S92_RS13685 (E3S92_13685) | - | 2767595..2769538 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| E3S92_RS13690 (E3S92_13690) | - | 2769540..2770460 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S92_RS13695 (E3S92_13695) | - | 2770541..2771158 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| E3S92_RS13700 (E3S92_13700) | ssbA | 2771159..2771629 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S92_RS13705 (E3S92_13705) | - | 2771659..2772552 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| E3S92_RS13710 (E3S92_13710) | - | 2772559..2772777 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3S92_RS13715 (E3S92_13715) | - | 2772786..2773190 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S92_RS13720 (E3S92_13720) | - | 2773203..2773571 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S92_RS13725 (E3S92_13725) | - | 2773575..2773817 (+) | 243 | Protein_2673 | SAV1978 family virulence-associated passenger protein | - |
| E3S92_RS13730 (E3S92_13730) | - | 2773832..2774086 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| E3S92_RS13840 | - | 2774073..2774243 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| E3S92_RS13735 (E3S92_13735) | - | 2774236..2774772 (+) | 537 | WP_160190250.1 | dUTPase | - |
| E3S92_RS13740 (E3S92_13740) | - | 2774809..2775054 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3S92_RS13745 (E3S92_13745) | - | 2775051..2775257 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| E3S92_RS13750 (E3S92_13750) | - | 2775254..2775640 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| E3S92_RS13755 (E3S92_13755) | rinB | 2775637..2775786 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S92_RS13760 (E3S92_13760) | - | 2775786..2775986 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| E3S92_RS13765 (E3S92_13765) | - | 2776014..2776430 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S92_RS13770 (E3S92_13770) | - | 2776662..2776961 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=417450 E3S92_RS13700 WP_000610648.1 2771159..2771629(+) (ssbA) [Staphylococcus aureus strain UP_926]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417450 E3S92_RS13700 WP_000610648.1 2771159..2771629(+) (ssbA) [Staphylococcus aureus strain UP_926]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |