Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S96_RS13510 | Genome accession | NZ_CP047828 |
| Coordinates | 2741618..2742088 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain UP_1073 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2721094..2747420 | 2741618..2742088 | within | 0 |
Gene organization within MGE regions
Location: 2721094..2747420
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S96_RS13370 (E3S96_13370) | groES | 2721094..2721378 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S96_RS13375 (E3S96_13375) | groL | 2721454..2723070 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3S96_RS13380 (E3S96_13380) | - | 2723602..2724909 (-) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| E3S96_RS13385 (E3S96_13385) | - | 2725305..2726528 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| E3S96_RS13390 (E3S96_13390) | - | 2726959..2728014 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| E3S96_RS13395 (E3S96_13395) | - | 2728036..2729055 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| E3S96_RS13400 (E3S96_13400) | sph | 2729312..2730136 (-) | 825 | Protein_2609 | sphingomyelin phosphodiesterase | - |
| E3S96_RS13405 (E3S96_13405) | - | 2730193..2731230 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| E3S96_RS13410 (E3S96_13410) | - | 2731289..2731753 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3S96_RS13415 (E3S96_13415) | - | 2731853..2732035 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3S96_RS13420 (E3S96_13420) | - | 2732239..2732580 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S96_RS13425 (E3S96_13425) | - | 2732586..2733518 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S96_RS13430 (E3S96_13430) | - | 2733534..2734247 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S96_RS13435 (E3S96_13435) | - | 2734210..2734383 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| E3S96_RS13440 (E3S96_13440) | - | 2734380..2734643 (+) | 264 | WP_000854073.1 | helix-turn-helix transcriptional regulator | - |
| E3S96_RS13445 (E3S96_13445) | - | 2734659..2734874 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S96_RS13450 (E3S96_13450) | - | 2734863..2735192 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3S96_RS13455 (E3S96_13455) | - | 2735243..2735995 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S96_RS13460 (E3S96_13460) | - | 2736011..2736208 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3S96_RS13465 (E3S96_13465) | - | 2736195..2736575 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| E3S96_RS13470 (E3S96_13470) | - | 2736630..2736953 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S96_RS13475 (E3S96_13475) | - | 2736950..2737111 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S96_RS13480 (E3S96_13480) | - | 2737206..2737508 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S96_RS13485 (E3S96_13485) | - | 2737513..2737773 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S96_RS13490 (E3S96_13490) | - | 2737782..2738045 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S96_RS13495 (E3S96_13495) | - | 2738054..2739997 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| E3S96_RS13500 (E3S96_13500) | - | 2739999..2740919 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S96_RS13505 (E3S96_13505) | - | 2741000..2741617 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| E3S96_RS13510 (E3S96_13510) | ssbA | 2741618..2742088 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S96_RS13515 (E3S96_13515) | - | 2742118..2743011 (+) | 894 | WP_000148323.1 | DnaD domain protein | - |
| E3S96_RS13520 (E3S96_13520) | - | 2743018..2743236 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3S96_RS13525 (E3S96_13525) | - | 2743245..2743649 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S96_RS13530 (E3S96_13530) | - | 2743662..2744030 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S96_RS13535 (E3S96_13535) | - | 2744034..2744276 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S96_RS13540 (E3S96_13540) | - | 2744291..2744545 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| E3S96_RS13740 | - | 2744532..2744702 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| E3S96_RS13545 (E3S96_13545) | - | 2744695..2745231 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| E3S96_RS13550 (E3S96_13550) | - | 2745268..2745513 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3S96_RS13555 (E3S96_13555) | - | 2745510..2745716 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| E3S96_RS13560 (E3S96_13560) | - | 2745713..2746099 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| E3S96_RS13565 (E3S96_13565) | rinB | 2746096..2746245 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S96_RS13570 (E3S96_13570) | - | 2746245..2746445 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| E3S96_RS13575 (E3S96_13575) | - | 2746473..2746889 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S96_RS13580 (E3S96_13580) | - | 2747121..2747420 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=417369 E3S96_RS13510 WP_000610648.1 2741618..2742088(+) (ssbA) [Staphylococcus aureus strain UP_1073]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417369 E3S96_RS13510 WP_000610648.1 2741618..2742088(+) (ssbA) [Staphylococcus aureus strain UP_1073]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |