Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T02_RS13940 | Genome accession | NZ_CP047822 |
| Coordinates | 2809010..2809480 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934769.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_1278 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2785172..2816129 | 2809010..2809480 | within | 0 |
Gene organization within MGE regions
Location: 2785172..2816129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T02_RS13780 (E3T02_13780) | groES | 2785172..2785456 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3T02_RS13785 (E3T02_13785) | groL | 2785532..2787148 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3T02_RS13790 (E3T02_13790) | - | 2787685..2787864 (+) | 180 | WP_000201397.1 | hypothetical protein | - |
| E3T02_RS13795 (E3T02_13795) | - | 2787861..2788487 (+) | 627 | WP_000216894.1 | hypothetical protein | - |
| E3T02_RS13800 (E3T02_13800) | - | 2789060..2790367 (-) | 1308 | WP_045174153.1 | TrkH family potassium uptake protein | - |
| E3T02_RS13805 (E3T02_13805) | - | 2790528..2791439 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| E3T02_RS13810 (E3T02_13810) | - | 2791501..2792345 (+) | 845 | Protein_2678 | class I SAM-dependent methyltransferase | - |
| E3T02_RS13815 (E3T02_13815) | - | 2792717..2793940 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| E3T02_RS13820 (E3T02_13820) | lukH | 2794376..2795428 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| E3T02_RS13825 (E3T02_13825) | lukG | 2795450..2796466 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| E3T02_RS13830 (E3T02_13830) | sph | 2796704..2797528 (-) | 825 | Protein_2682 | sphingomyelin phosphodiesterase | - |
| E3T02_RS13835 (E3T02_13835) | - | 2797585..2798622 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| E3T02_RS13840 (E3T02_13840) | - | 2798681..2799145 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3T02_RS13845 (E3T02_13845) | - | 2799245..2799427 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3T02_RS13850 (E3T02_13850) | - | 2799631..2799972 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3T02_RS13855 (E3T02_13855) | - | 2799978..2800910 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3T02_RS13860 (E3T02_13860) | - | 2800926..2801639 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3T02_RS13865 (E3T02_13865) | - | 2801602..2801775 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| E3T02_RS13870 (E3T02_13870) | - | 2801772..2802035 (+) | 264 | WP_061823675.1 | helix-turn-helix transcriptional regulator | - |
| E3T02_RS13875 (E3T02_13875) | - | 2802051..2802266 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3T02_RS13880 (E3T02_13880) | - | 2802255..2802584 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3T02_RS13885 (E3T02_13885) | - | 2802635..2803387 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T02_RS13890 (E3T02_13890) | - | 2803403..2803600 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3T02_RS13895 (E3T02_13895) | - | 2803587..2803967 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3T02_RS13900 (E3T02_13900) | - | 2804022..2804345 (+) | 324 | WP_061823677.1 | DUF771 domain-containing protein | - |
| E3T02_RS13905 (E3T02_13905) | - | 2804342..2804503 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3T02_RS13910 (E3T02_13910) | - | 2804598..2804900 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3T02_RS13915 (E3T02_13915) | - | 2804905..2805165 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3T02_RS13920 (E3T02_13920) | - | 2805174..2805437 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3T02_RS13925 (E3T02_13925) | - | 2805446..2807389 (+) | 1944 | Protein_2701 | AAA family ATPase | - |
| E3T02_RS13930 (E3T02_13930) | - | 2807391..2808311 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3T02_RS13935 (E3T02_13935) | - | 2808392..2809009 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| E3T02_RS13940 (E3T02_13940) | ssbA | 2809010..2809480 (+) | 471 | WP_000934769.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T02_RS13945 (E3T02_13945) | - | 2809510..2810403 (+) | 894 | WP_000148329.1 | DnaD domain protein | - |
| E3T02_RS13950 (E3T02_13950) | - | 2810410..2810628 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3T02_RS13955 (E3T02_13955) | - | 2810637..2811041 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3T02_RS13960 (E3T02_13960) | - | 2811054..2811422 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T02_RS13965 (E3T02_13965) | - | 2811426..2811668 (+) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| E3T02_RS13970 (E3T02_13970) | - | 2811682..2812068 (+) | 387 | WP_000693615.1 | hypothetical protein | - |
| E3T02_RS14205 | - | 2812065..2812259 (+) | 195 | WP_000983954.1 | hypothetical protein | - |
| E3T02_RS13975 (E3T02_13975) | - | 2812256..2812705 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| E3T02_RS13980 (E3T02_13980) | - | 2812702..2812986 (+) | 285 | WP_001105621.1 | hypothetical protein | - |
| E3T02_RS13985 (E3T02_13985) | - | 2812979..2813227 (+) | 249 | WP_001065083.1 | DUF1024 family protein | - |
| E3T02_RS13990 (E3T02_13990) | - | 2813220..2813756 (+) | 537 | WP_000185669.1 | dUTP diphosphatase | - |
| E3T02_RS13995 (E3T02_13995) | - | 2813793..2813999 (+) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| E3T02_RS14000 (E3T02_14000) | rinB | 2813996..2814145 (+) | 150 | WP_000595267.1 | transcriptional activator RinB | - |
| E3T02_RS14005 (E3T02_14005) | - | 2814304..2814954 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| E3T02_RS14010 (E3T02_14010) | - | 2814954..2815154 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| E3T02_RS14015 (E3T02_14015) | - | 2815182..2815598 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3T02_RS14020 (E3T02_14020) | - | 2815830..2816129 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17671.55 Da Isoelectric Point: 5.2672
>NTDB_id=417284 E3T02_RS13940 WP_000934769.1 2809010..2809480(+) (ssbA) [Staphylococcus aureus strain UP_1278]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417284 E3T02_RS13940 WP_000934769.1 2809010..2809480(+) (ssbA) [Staphylococcus aureus strain UP_1278]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |