Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T06_RS13475 | Genome accession | NZ_CP047817 |
| Coordinates | 2735481..2735951 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_1433 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2718408..2740996 | 2735481..2735951 | within | 0 |
Gene organization within MGE regions
Location: 2718408..2740996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T06_RS13345 (E3T06_13355) | - | 2718408..2719631 (-) | 1224 | WP_160193024.1 | ArgE/DapE family deacylase | - |
| E3T06_RS13350 (E3T06_13360) | lukH | 2720067..2721122 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3T06_RS13355 (E3T06_13365) | lukG | 2721144..2722160 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3T06_RS13360 (E3T06_13370) | sph | 2722398..2723222 (-) | 825 | Protein_2587 | sphingomyelin phosphodiesterase | - |
| E3T06_RS13365 (E3T06_13375) | - | 2723279..2724316 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3T06_RS13370 (E3T06_13380) | - | 2724379..2724621 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3T06_RS13375 (E3T06_13385) | - | 2724632..2725615 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3T06_RS13380 (E3T06_13390) | - | 2725715..2725897 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3T06_RS13385 (E3T06_13395) | - | 2726101..2726442 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3T06_RS13390 (E3T06_13400) | - | 2726448..2727380 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3T06_RS13395 (E3T06_13405) | - | 2727396..2728109 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3T06_RS13400 (E3T06_13410) | - | 2728072..2728246 (+) | 175 | Protein_2595 | transcriptional regulator | - |
| E3T06_RS13405 (E3T06_13415) | - | 2728243..2728506 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3T06_RS13410 (E3T06_13420) | - | 2728522..2728737 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3T06_RS13415 (E3T06_13425) | - | 2728726..2729055 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3T06_RS13420 (E3T06_13430) | - | 2729106..2729858 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T06_RS13425 (E3T06_13435) | - | 2729874..2730071 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3T06_RS13430 (E3T06_13440) | - | 2730058..2730438 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3T06_RS13435 (E3T06_13445) | - | 2730493..2730816 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3T06_RS13440 (E3T06_13450) | - | 2730813..2730974 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3T06_RS13445 (E3T06_13455) | - | 2731069..2731371 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3T06_RS13450 (E3T06_13460) | - | 2731376..2731636 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3T06_RS13455 (E3T06_13465) | - | 2731645..2731908 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3T06_RS13460 (E3T06_13470) | - | 2731917..2733860 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| E3T06_RS13465 (E3T06_13475) | - | 2733862..2734782 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3T06_RS13470 (E3T06_13480) | - | 2734863..2735480 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3T06_RS13475 (E3T06_13485) | ssbA | 2735481..2735951 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T06_RS13480 (E3T06_13490) | - | 2735981..2736874 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3T06_RS13485 (E3T06_13495) | - | 2736881..2737098 (+) | 218 | Protein_2612 | hypothetical protein | - |
| E3T06_RS13490 (E3T06_13500) | - | 2737107..2737511 (+) | 405 | WP_160193025.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3T06_RS13495 (E3T06_13505) | - | 2737524..2737895 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T06_RS13500 (E3T06_13510) | - | 2737895..2738152 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3T06_RS13505 (E3T06_13515) | - | 2738155..2738397 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3T06_RS13510 (E3T06_13520) | - | 2738412..2738657 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3T06_RS13515 (E3T06_13525) | - | 2738654..2739190 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3T06_RS13520 (E3T06_13530) | - | 2739227..2739472 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3T06_RS13525 (E3T06_13535) | - | 2739469..2739675 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3T06_RS13530 (E3T06_13540) | rinB | 2739672..2739821 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3T06_RS13535 (E3T06_13545) | - | 2739821..2740021 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3T06_RS13540 (E3T06_13550) | - | 2740049..2740465 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3T06_RS13545 (E3T06_13555) | - | 2740697..2740996 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=417202 E3T06_RS13475 WP_000934759.1 2735481..2735951(+) (ssbA) [Staphylococcus aureus strain UP_1433]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417202 E3T06_RS13475 WP_000934759.1 2735481..2735951(+) (ssbA) [Staphylococcus aureus strain UP_1433]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |