Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T10_RS13635 | Genome accession | NZ_CP047811 |
| Coordinates | 2752339..2752809 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain UP_1522 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2730532..2758141 | 2752339..2752809 | within | 0 |
Gene organization within MGE regions
Location: 2730532..2758141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T10_RS13490 (E3T10_13490) | groES | 2730532..2730816 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3T10_RS13495 (E3T10_13495) | groL | 2730892..2732508 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3T10_RS13500 (E3T10_13500) | - | 2733040..2734347 (-) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| E3T10_RS13505 (E3T10_13505) | - | 2734800..2736023 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| E3T10_RS13510 (E3T10_13510) | - | 2736454..2737509 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| E3T10_RS13515 (E3T10_13515) | - | 2737531..2738550 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| E3T10_RS13520 (E3T10_13520) | sph | 2738807..2739631 (-) | 825 | Protein_2629 | sphingomyelin phosphodiesterase | - |
| E3T10_RS13525 (E3T10_13525) | - | 2739688..2740725 (-) | 1038 | WP_086045362.1 | tyrosine-type recombinase/integrase | - |
| E3T10_RS13530 (E3T10_13530) | - | 2740784..2741248 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3T10_RS13535 (E3T10_13535) | - | 2741348..2741530 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3T10_RS13545 (E3T10_13545) | - | 2742961..2743302 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3T10_RS13550 (E3T10_13550) | - | 2743308..2744240 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3T10_RS13555 (E3T10_13555) | - | 2744256..2744969 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3T10_RS13560 (E3T10_13560) | - | 2744932..2745105 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| E3T10_RS13565 (E3T10_13565) | - | 2745102..2745383 (+) | 282 | WP_000854074.1 | helix-turn-helix transcriptional regulator | - |
| E3T10_RS13570 (E3T10_13570) | - | 2745380..2745595 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3T10_RS13575 (E3T10_13575) | - | 2745584..2745913 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3T10_RS13580 (E3T10_13580) | - | 2745964..2746716 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T10_RS13585 (E3T10_13585) | - | 2746732..2746929 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3T10_RS13590 (E3T10_13590) | - | 2746916..2747296 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| E3T10_RS13595 (E3T10_13595) | - | 2747351..2747674 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3T10_RS13600 (E3T10_13600) | - | 2747671..2747832 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3T10_RS13605 (E3T10_13605) | - | 2747927..2748229 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3T10_RS13610 (E3T10_13610) | - | 2748234..2748494 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3T10_RS13615 (E3T10_13615) | - | 2748503..2748766 (+) | 264 | Protein_2648 | hypothetical protein | - |
| E3T10_RS13620 (E3T10_13620) | - | 2748775..2750718 (+) | 1944 | WP_064135593.1 | AAA family ATPase | - |
| E3T10_RS13625 (E3T10_13625) | - | 2750720..2751640 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3T10_RS13630 (E3T10_13630) | - | 2751721..2752338 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| E3T10_RS13635 (E3T10_13635) | ssbA | 2752339..2752809 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T10_RS13640 (E3T10_13640) | - | 2752839..2753732 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| E3T10_RS13645 (E3T10_13645) | - | 2753739..2753957 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3T10_RS13650 (E3T10_13650) | - | 2753966..2754370 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3T10_RS13655 (E3T10_13655) | - | 2754383..2754751 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T10_RS13660 (E3T10_13660) | - | 2754755..2754997 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| E3T10_RS13665 (E3T10_13665) | - | 2755012..2755266 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| E3T10_RS13870 | - | 2755253..2755423 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| E3T10_RS13670 (E3T10_13670) | - | 2755416..2755952 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| E3T10_RS13675 (E3T10_13675) | - | 2755989..2756234 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3T10_RS13680 (E3T10_13680) | - | 2756231..2756437 (+) | 207 | WP_160186339.1 | DUF1381 domain-containing protein | - |
| E3T10_RS13685 (E3T10_13685) | - | 2756434..2756820 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| E3T10_RS13690 (E3T10_13690) | rinB | 2756817..2756966 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3T10_RS13695 (E3T10_13695) | - | 2756966..2757166 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| E3T10_RS13700 (E3T10_13700) | - | 2757194..2757610 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3T10_RS13705 (E3T10_13705) | - | 2757842..2758141 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=417077 E3T10_RS13635 WP_000610648.1 2752339..2752809(+) (ssbA) [Staphylococcus aureus strain UP_1522]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417077 E3T10_RS13635 WP_000610648.1 2752339..2752809(+) (ssbA) [Staphylococcus aureus strain UP_1522]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |