Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T14_RS14445 | Genome accession | NZ_CP047809 |
| Coordinates | 2870323..2870793 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_1591 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2857310..2876492 | 2870323..2870793 | within | 0 |
Gene organization within MGE regions
Location: 2857310..2876492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T14_RS14345 (E3T14_14370) | sufB | 2857310..2858707 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| E3T14_RS14350 (E3T14_14375) | - | 2858775..2859824 (-) | 1050 | WP_031764589.1 | tyrosine-type recombinase/integrase | - |
| E3T14_RS14355 (E3T14_14380) | - | 2859891..2860133 (-) | 243 | WP_031900793.1 | hypothetical protein | - |
| E3T14_RS14360 (E3T14_14385) | - | 2860144..2861127 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3T14_RS14365 (E3T14_14390) | - | 2861183..2861812 (-) | 630 | WP_031881520.1 | XRE family transcriptional regulator | - |
| E3T14_RS14370 (E3T14_14395) | - | 2861966..2862193 (+) | 228 | WP_015978369.1 | helix-turn-helix transcriptional regulator | - |
| E3T14_RS14375 (E3T14_14400) | - | 2862216..2862992 (+) | 777 | WP_031900794.1 | Rha family transcriptional regulator | - |
| E3T14_RS14380 (E3T14_14405) | - | 2863018..2863278 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| E3T14_RS14385 (E3T14_14410) | - | 2863302..2863841 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| E3T14_RS14390 (E3T14_14415) | - | 2863898..2864650 (+) | 753 | WP_001148618.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T14_RS14395 (E3T14_14420) | - | 2864667..2864861 (+) | 195 | WP_000388066.1 | hypothetical protein | - |
| E3T14_RS14400 (E3T14_14425) | - | 2864892..2865032 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| E3T14_RS14405 (E3T14_14430) | - | 2865047..2865679 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| E3T14_RS14410 (E3T14_14435) | - | 2865750..2865971 (+) | 222 | WP_000594790.1 | hypothetical protein | - |
| E3T14_RS14415 (E3T14_14440) | - | 2865964..2866125 (+) | 162 | WP_050956528.1 | DUF1270 domain-containing protein | - |
| E3T14_RS14420 (E3T14_14445) | - | 2866218..2866478 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| E3T14_RS14425 (E3T14_14450) | - | 2866487..2866750 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3T14_RS14430 (E3T14_14455) | - | 2866759..2868702 (+) | 1944 | WP_000700562.1 | AAA family ATPase | - |
| E3T14_RS14435 (E3T14_14460) | - | 2868704..2869624 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| E3T14_RS14440 (E3T14_14465) | - | 2869705..2870322 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| E3T14_RS14445 (E3T14_14470) | ssbA | 2870323..2870793 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T14_RS14450 (E3T14_14475) | - | 2870823..2871707 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| E3T14_RS14455 (E3T14_14480) | - | 2871714..2871932 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3T14_RS14460 (E3T14_14485) | - | 2871941..2872345 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3T14_RS14465 (E3T14_14490) | - | 2872358..2872726 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T14_RS14470 (E3T14_14495) | - | 2872730..2872972 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| E3T14_RS14475 (E3T14_14500) | - | 2873037..2873486 (+) | 450 | WP_161575772.1 | YopX family protein | - |
| E3T14_RS14480 (E3T14_14505) | - | 2873483..2873992 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| E3T14_RS14485 (E3T14_14510) | - | 2873989..2874399 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| E3T14_RS14490 (E3T14_14515) | - | 2874392..2874928 (+) | 537 | WP_001066444.1 | dUTPase | - |
| E3T14_RS14495 (E3T14_14520) | - | 2874965..2875171 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| E3T14_RS14500 (E3T14_14525) | - | 2875168..2875317 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3T14_RS14505 (E3T14_14530) | - | 2875317..2875517 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| E3T14_RS14510 (E3T14_14535) | - | 2875545..2875961 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| E3T14_RS14515 (E3T14_14540) | - | 2876193..2876492 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=417036 E3T14_RS14445 WP_000934770.1 2870323..2870793(+) (ssbA) [Staphylococcus aureus strain UP_1591]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=417036 E3T14_RS14445 WP_000934770.1 2870323..2870793(+) (ssbA) [Staphylococcus aureus strain UP_1591]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |