Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S67_RS14305 | Genome accession | NZ_CP047802 |
| Coordinates | 2864466..2864936 (+) | Length | 156 a.a. |
| NCBI ID | WP_075111488.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_1442 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2852138..2871739 | 2864466..2864936 | within | 0 |
Gene organization within MGE regions
Location: 2852138..2871739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S67_RS14195 (E3S67_14195) | - | 2852138..2853343 (-) | 1206 | WP_000264185.1 | tyrosine-type recombinase/integrase | - |
| E3S67_RS14200 (E3S67_14200) | - | 2853538..2854242 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S67_RS14205 (E3S67_14205) | - | 2854382..2854549 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| E3S67_RS14210 (E3S67_14210) | - | 2854646..2855566 (-) | 921 | WP_000348133.1 | exonuclease domain-containing protein | - |
| E3S67_RS14215 (E3S67_14215) | - | 2855582..2856196 (-) | 615 | WP_000801423.1 | LexA family protein | - |
| E3S67_RS14220 (E3S67_14220) | - | 2856368..2856595 (+) | 228 | WP_001030311.1 | hypothetical protein | - |
| E3S67_RS14225 (E3S67_14225) | - | 2856621..2857406 (+) | 786 | WP_053007317.1 | phage antirepressor | - |
| E3S67_RS14230 (E3S67_14230) | - | 2857419..2857679 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| E3S67_RS14545 | - | 2857703..2857858 (-) | 156 | Protein_2767 | hypothetical protein | - |
| E3S67_RS14240 (E3S67_14240) | - | 2857913..2858152 (+) | 240 | WP_001294156.1 | hypothetical protein | - |
| E3S67_RS14245 (E3S67_14245) | - | 2858479..2858670 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| E3S67_RS14250 (E3S67_14250) | - | 2858672..2858899 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| E3S67_RS14255 (E3S67_14255) | - | 2858955..2859281 (+) | 327 | WP_053007318.1 | hypothetical protein | - |
| E3S67_RS14550 | - | 2859278..2859377 (+) | 100 | Protein_2772 | hypothetical protein | - |
| E3S67_RS14265 (E3S67_14265) | - | 2859526..2859789 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| E3S67_RS14270 (E3S67_14270) | - | 2859801..2859962 (+) | 162 | WP_000066014.1 | DUF1270 domain-containing protein | - |
| E3S67_RS14275 (E3S67_14275) | - | 2860055..2860357 (+) | 303 | WP_053007319.1 | DUF2482 family protein | - |
| E3S67_RS14280 (E3S67_14280) | - | 2860361..2860621 (+) | 261 | WP_053007320.1 | DUF1108 family protein | - |
| E3S67_RS14285 (E3S67_14285) | - | 2860630..2860893 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S67_RS14290 (E3S67_14290) | - | 2860902..2862845 (+) | 1944 | WP_160200083.1 | AAA family ATPase | - |
| E3S67_RS14295 (E3S67_14295) | - | 2862847..2863767 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S67_RS14300 (E3S67_14300) | - | 2863848..2864465 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| E3S67_RS14305 (E3S67_14305) | ssbA | 2864466..2864936 (+) | 471 | WP_075111488.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S67_RS14310 (E3S67_14310) | - | 2864966..2865850 (+) | 885 | WP_000148300.1 | DnaD domain protein | - |
| E3S67_RS14315 (E3S67_14315) | - | 2865857..2866075 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3S67_RS14320 (E3S67_14320) | - | 2866084..2866488 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S67_RS14325 (E3S67_14325) | - | 2866501..2866872 (+) | 372 | WP_031928234.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S67_RS14330 (E3S67_14330) | - | 2866873..2867121 (+) | 249 | WP_031928233.1 | phi PVL orf 51-like protein | - |
| E3S67_RS14335 (E3S67_14335) | - | 2867162..2867410 (+) | 249 | WP_031889594.1 | DUF1024 family protein | - |
| E3S67_RS14340 (E3S67_14340) | - | 2867403..2867912 (+) | 510 | WP_000185636.1 | dUTP diphosphatase | - |
| E3S67_RS14345 (E3S67_14345) | - | 2867949..2868194 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3S67_RS14350 (E3S67_14350) | - | 2868191..2868379 (+) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| E3S67_RS14355 (E3S67_14355) | - | 2868354..2868554 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| E3S67_RS14360 (E3S67_14360) | rinB | 2868557..2868706 (+) | 150 | WP_000237868.1 | transcriptional activator RinB | - |
| E3S67_RS14555 | - | 2868865..2869281 (+) | 417 | WP_001005263.1 | hypothetical protein | - |
| E3S67_RS14370 (E3S67_14370) | - | 2869514..2869714 (+) | 201 | WP_001794311.1 | DUF1514 family protein | - |
| E3S67_RS14375 (E3S67_14375) | - | 2869737..2870216 (+) | 480 | WP_000282747.1 | hypothetical protein | - |
| E3S67_RS14380 (E3S67_14380) | - | 2870331..2870783 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| E3S67_RS14385 (E3S67_14385) | - | 2870799..2871143 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| E3S67_RS14390 (E3S67_14390) | - | 2871272..2871739 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=416821 E3S67_RS14305 WP_075111488.1 2864466..2864936(+) (ssbA) [Staphylococcus aureus strain UP_1442]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416821 E3S67_RS14305 WP_075111488.1 2864466..2864936(+) (ssbA) [Staphylococcus aureus strain UP_1442]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCGGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCGGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |