Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3S67_RS08845 Genome accession   NZ_CP047802
Coordinates   1738615..1739085 (-) Length   156 a.a.
NCBI ID   WP_075111488.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1733615..1744085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S67_RS08780 (E3S67_08780) - 1733837..1734037 (-) 201 WP_000265041.1 DUF1514 family protein -
  E3S67_RS14480 - 1734270..1734686 (-) 417 WP_001005263.1 hypothetical protein -
  E3S67_RS08790 (E3S67_08790) rinB 1734845..1734994 (-) 150 WP_000237868.1 transcriptional activator RinB -
  E3S67_RS08795 (E3S67_08795) - 1734997..1735197 (-) 201 WP_001125015.1 hypothetical protein -
  E3S67_RS08800 (E3S67_08800) - 1735172..1735360 (-) 189 WP_000195782.1 DUF1381 domain-containing protein -
  E3S67_RS08805 (E3S67_08805) - 1735357..1735602 (-) 246 WP_001282074.1 hypothetical protein -
  E3S67_RS08810 (E3S67_08810) - 1735639..1736148 (-) 510 WP_000185636.1 dUTP diphosphatase -
  E3S67_RS08815 (E3S67_08815) - 1736141..1736389 (-) 249 WP_031889594.1 DUF1024 family protein -
  E3S67_RS08820 (E3S67_08820) - 1736430..1736678 (-) 249 WP_031928233.1 phi PVL orf 51-like protein -
  E3S67_RS08825 (E3S67_08825) - 1736679..1737050 (-) 372 WP_031928234.1 SA1788 family PVL leukocidin-associated protein -
  E3S67_RS08830 (E3S67_08830) - 1737063..1737467 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  E3S67_RS08835 (E3S67_08835) - 1737476..1737694 (-) 219 WP_000338530.1 hypothetical protein -
  E3S67_RS08840 (E3S67_08840) - 1737701..1738585 (-) 885 WP_000148300.1 DnaD domain protein -
  E3S67_RS08845 (E3S67_08845) ssbA 1738615..1739085 (-) 471 WP_075111488.1 single-stranded DNA-binding protein Machinery gene
  E3S67_RS08850 (E3S67_08850) - 1739086..1739703 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  E3S67_RS08855 (E3S67_08855) - 1739784..1740704 (-) 921 WP_000138475.1 recombinase RecT -
  E3S67_RS08860 (E3S67_08860) - 1740706..1742649 (-) 1944 WP_031928235.1 AAA family ATPase -
  E3S67_RS08865 (E3S67_08865) - 1742658..1742921 (-) 264 WP_001205732.1 hypothetical protein -
  E3S67_RS08870 (E3S67_08870) - 1742930..1743190 (-) 261 WP_031807558.1 DUF1108 family protein -
  E3S67_RS08875 (E3S67_08875) - 1743194..1743496 (-) 303 WP_031807559.1 DUF2482 family protein -
  E3S67_RS08880 (E3S67_08880) - 1743589..1743750 (-) 162 WP_000066014.1 DUF1270 domain-containing protein -
  E3S67_RS08885 (E3S67_08885) - 1743747..1744067 (-) 321 WP_001120935.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17627.49 Da        Isoelectric Point: 5.2672

>NTDB_id=416810 E3S67_RS08845 WP_075111488.1 1738615..1739085(-) (ssbA) [Staphylococcus aureus strain UP_1442]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=416810 E3S67_RS08845 WP_075111488.1 1738615..1739085(-) (ssbA) [Staphylococcus aureus strain UP_1442]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCGGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365

Multiple sequence alignment