Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S72_RS14050 | Genome accession | NZ_CP047800 |
| Coordinates | 2813283..2813753 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_296 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2796210..2818799 | 2813283..2813753 | within | 0 |
Gene organization within MGE regions
Location: 2796210..2818799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S72_RS13920 (E3S72_13920) | - | 2796210..2797433 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3S72_RS13925 (E3S72_13925) | lukH | 2797869..2798924 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3S72_RS13930 (E3S72_13930) | lukG | 2798946..2799962 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3S72_RS13935 (E3S72_13935) | sph | 2800200..2801024 (-) | 825 | Protein_2713 | sphingomyelin phosphodiesterase | - |
| E3S72_RS13940 (E3S72_13940) | - | 2801081..2802118 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3S72_RS13945 (E3S72_13945) | - | 2802181..2802423 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3S72_RS13950 (E3S72_13950) | - | 2802434..2803417 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3S72_RS13955 (E3S72_13955) | - | 2803517..2803699 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3S72_RS13960 (E3S72_13960) | - | 2803903..2804244 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S72_RS13965 (E3S72_13965) | - | 2804250..2805182 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S72_RS13970 (E3S72_13970) | - | 2805198..2805911 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S72_RS13975 (E3S72_13975) | - | 2805874..2806048 (+) | 175 | Protein_2721 | transcriptional regulator | - |
| E3S72_RS13980 (E3S72_13980) | - | 2806045..2806308 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3S72_RS13985 (E3S72_13985) | - | 2806324..2806539 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S72_RS13990 (E3S72_13990) | - | 2806528..2806857 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3S72_RS13995 (E3S72_13995) | - | 2806908..2807660 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S72_RS14000 (E3S72_14000) | - | 2807676..2807873 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3S72_RS14005 (E3S72_14005) | - | 2807860..2808240 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S72_RS14010 (E3S72_14010) | - | 2808295..2808618 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S72_RS14015 (E3S72_14015) | - | 2808615..2808776 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S72_RS14020 (E3S72_14020) | - | 2808871..2809173 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S72_RS14025 (E3S72_14025) | - | 2809178..2809438 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S72_RS14030 (E3S72_14030) | - | 2809447..2809710 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S72_RS14035 (E3S72_14035) | - | 2809719..2811662 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| E3S72_RS14040 (E3S72_14040) | - | 2811664..2812584 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3S72_RS14045 (E3S72_14045) | - | 2812665..2813282 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3S72_RS14050 (E3S72_14050) | ssbA | 2813283..2813753 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S72_RS14055 (E3S72_14055) | - | 2813783..2814676 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| E3S72_RS14060 (E3S72_14060) | - | 2814683..2814901 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S72_RS14065 (E3S72_14065) | - | 2814910..2815314 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S72_RS14070 (E3S72_14070) | - | 2815327..2815698 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S72_RS14075 (E3S72_14075) | - | 2815698..2815955 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3S72_RS14080 (E3S72_14080) | - | 2815958..2816200 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S72_RS14085 (E3S72_14085) | - | 2816215..2816460 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3S72_RS14090 (E3S72_14090) | - | 2816457..2816993 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3S72_RS14095 (E3S72_14095) | - | 2817030..2817275 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S72_RS14100 (E3S72_14100) | - | 2817272..2817478 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S72_RS14105 (E3S72_14105) | rinB | 2817475..2817624 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S72_RS14110 (E3S72_14110) | - | 2817624..2817824 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S72_RS14115 (E3S72_14115) | - | 2817852..2818268 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S72_RS14120 (E3S72_14120) | - | 2818500..2818799 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=416734 E3S72_RS14050 WP_000934759.1 2813283..2813753(+) (ssbA) [Staphylococcus aureus strain UP_296]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416734 E3S72_RS14050 WP_000934759.1 2813283..2813753(+) (ssbA) [Staphylococcus aureus strain UP_296]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |