Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S73_RS13910 | Genome accession | NZ_CP047799 |
| Coordinates | 2816020..2816490 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_322 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2794168..2821427 | 2816020..2816490 | within | 0 |
Gene organization within MGE regions
Location: 2794168..2821427
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S73_RS13770 (E3S73_13770) | groES | 2794168..2794452 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S73_RS13775 (E3S73_13775) | groL | 2794528..2796144 (+) | 1617 | WP_000240651.1 | chaperonin GroEL | - |
| E3S73_RS13780 (E3S73_13780) | - | 2796686..2796865 (+) | 180 | WP_000201397.1 | hypothetical protein | - |
| E3S73_RS14150 | - | 2796862..2797158 (+) | 297 | WP_001573769.1 | hypothetical protein | - |
| E3S73_RS13785 (E3S73_13785) | - | 2797148..2797489 (+) | 342 | WP_001573771.1 | hypothetical protein | - |
| E3S73_RS13790 (E3S73_13790) | - | 2798067..2799374 (-) | 1308 | WP_001045073.1 | TrkH family potassium uptake protein | - |
| E3S73_RS13795 (E3S73_13795) | - | 2799813..2801036 (-) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| E3S73_RS13800 (E3S73_13800) | - | 2801468..2802523 (+) | 1056 | WP_000791398.1 | leukocidin family pore-forming toxin | - |
| E3S73_RS13805 (E3S73_13805) | - | 2802545..2803564 (+) | 1020 | WP_000595617.1 | leukocidin/hemolysin toxin family protein | - |
| E3S73_RS13810 (E3S73_13810) | sph | 2803821..2804645 (-) | 825 | Protein_2691 | sphingomyelin phosphodiesterase | - |
| E3S73_RS13815 (E3S73_13815) | - | 2804702..2805739 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| E3S73_RS13820 (E3S73_13820) | - | 2805912..2806451 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S73_RS13825 (E3S73_13825) | - | 2806591..2806758 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| E3S73_RS13830 (E3S73_13830) | - | 2806829..2807014 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| E3S73_RS14065 | - | 2807011..2807157 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| E3S73_RS13835 (E3S73_13835) | - | 2807231..2808085 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| E3S73_RS13840 (E3S73_13840) | - | 2808097..2808813 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| E3S73_RS13845 (E3S73_13845) | - | 2808977..2809219 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| E3S73_RS13850 (E3S73_13850) | - | 2809232..2809675 (+) | 444 | WP_001662741.1 | hypothetical protein | - |
| E3S73_RS13855 (E3S73_13855) | - | 2809690..2809830 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| E3S73_RS13860 (E3S73_13860) | - | 2809823..2810032 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| E3S73_RS13865 (E3S73_13865) | - | 2810089..2810838 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S73_RS13870 (E3S73_13870) | - | 2810851..2811111 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| E3S73_RS14155 | - | 2811135..2811290 (-) | 156 | Protein_2705 | hypothetical protein | - |
| E3S73_RS13875 (E3S73_13875) | - | 2811344..2811664 (+) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| E3S73_RS13880 (E3S73_13880) | - | 2811661..2811822 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| E3S73_RS13885 (E3S73_13885) | - | 2811915..2812175 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| E3S73_RS13890 (E3S73_13890) | - | 2812184..2812447 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S73_RS13895 (E3S73_13895) | - | 2812444..2814399 (+) | 1956 | WP_061741411.1 | AAA family ATPase | - |
| E3S73_RS13900 (E3S73_13900) | - | 2814401..2815321 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S73_RS13905 (E3S73_13905) | - | 2815402..2816019 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| E3S73_RS13910 (E3S73_13910) | ssbA | 2816020..2816490 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S73_RS13915 (E3S73_13915) | - | 2816520..2817404 (+) | 885 | WP_061741412.1 | DnaD domain protein | - |
| E3S73_RS13920 (E3S73_13920) | - | 2817411..2817629 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S73_RS13925 (E3S73_13925) | - | 2817638..2818042 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S73_RS13930 (E3S73_13930) | - | 2818055..2818423 (+) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S73_RS13935 (E3S73_13935) | - | 2818427..2818669 (+) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| E3S73_RS13940 (E3S73_13940) | - | 2818684..2818932 (+) | 249 | WP_015974517.1 | DUF1024 family protein | - |
| E3S73_RS13945 (E3S73_13945) | - | 2818925..2819461 (+) | 537 | WP_000185680.1 | dUTPase | - |
| E3S73_RS13950 (E3S73_13950) | - | 2819498..2819740 (+) | 243 | WP_000028780.1 | hypothetical protein | - |
| E3S73_RS13955 (E3S73_13955) | - | 2819737..2819925 (+) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| E3S73_RS13960 (E3S73_13960) | - | 2819900..2820100 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| E3S73_RS13965 (E3S73_13965) | rinB | 2820103..2820252 (+) | 150 | WP_000237868.1 | transcriptional activator RinB | - |
| E3S73_RS13970 (E3S73_13970) | - | 2820252..2820452 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3S73_RS13975 (E3S73_13975) | - | 2820480..2820896 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S73_RS13980 (E3S73_13980) | - | 2821128..2821427 (+) | 300 | WP_000988330.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=416692 E3S73_RS13910 WP_000934770.1 2816020..2816490(+) (ssbA) [Staphylococcus aureus strain UP_322]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416692 E3S73_RS13910 WP_000934770.1 2816020..2816490(+) (ssbA) [Staphylococcus aureus strain UP_322]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |