Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S73_RS08460 | Genome accession | NZ_CP047799 |
| Coordinates | 1681748..1682251 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UP_322 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1661556..1686311 | 1681748..1682251 | within | 0 |
Gene organization within MGE regions
Location: 1661556..1686311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S73_RS08305 (E3S73_08305) | - | 1661556..1661819 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| E3S73_RS08310 (E3S73_08310) | - | 1661957..1662529 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| E3S73_RS08315 (E3S73_08315) | - | 1662710..1663078 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| E3S73_RS08320 (E3S73_08320) | - | 1663315..1664029 (+) | 715 | Protein_1603 | tyrosine-type recombinase/integrase | - |
| E3S73_RS08325 (E3S73_08325) | - | 1664035..1665042 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| E3S73_RS08330 (E3S73_08330) | - | 1665799..1665984 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| E3S73_RS08335 (E3S73_08335) | - | 1665986..1666096 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| E3S73_RS08340 (E3S73_08340) | - | 1666167..1666319 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| E3S73_RS14230 | - | 1666580..1666678 (-) | 99 | Protein_1608 | hypothetical protein | - |
| E3S73_RS14170 | - | 1666825..1666956 (-) | 132 | WP_000247644.1 | hypothetical protein | - |
| E3S73_RS08345 (E3S73_08345) | - | 1667152..1668093 (-) | 942 | WP_000323493.1 | hypothetical protein | - |
| E3S73_RS08350 (E3S73_08350) | - | 1668098..1668727 (-) | 630 | WP_000742266.1 | hypothetical protein | - |
| E3S73_RS08355 (E3S73_08355) | - | 1668714..1669205 (-) | 492 | WP_000770704.1 | hypothetical protein | - |
| E3S73_RS08360 (E3S73_08360) | - | 1669662..1670231 (-) | 570 | WP_115276898.1 | terminase small subunit | - |
| E3S73_RS08365 (E3S73_08365) | - | 1670228..1670440 (-) | 213 | WP_045181470.1 | hypothetical protein | - |
| E3S73_RS08370 (E3S73_08370) | - | 1670572..1671099 (-) | 528 | WP_160200125.1 | spore coat protein | - |
| E3S73_RS08375 (E3S73_08375) | - | 1671150..1671368 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| E3S73_RS08380 (E3S73_08380) | - | 1671386..1671964 (-) | 579 | WP_052995614.1 | hypothetical protein | - |
| E3S73_RS08385 (E3S73_08385) | - | 1671976..1672317 (-) | 342 | WP_001190616.1 | hypothetical protein | - |
| E3S73_RS08390 (E3S73_08390) | - | 1672855..1673496 (-) | 642 | WP_123090293.1 | pathogenicity island protein | - |
| E3S73_RS08395 (E3S73_08395) | - | 1673498..1673761 (-) | 264 | WP_001804819.1 | hypothetical protein | - |
| E3S73_RS08400 (E3S73_08400) | - | 1673763..1674125 (-) | 363 | WP_001039165.1 | hypothetical protein | - |
| E3S73_RS08405 (E3S73_08405) | - | 1674404..1675873 (-) | 1470 | WP_053040304.1 | virulence-associated E family protein | - |
| E3S73_RS08410 (E3S73_08410) | - | 1675890..1676759 (-) | 870 | WP_053040303.1 | primase alpha helix C-terminal domain-containing protein | - |
| E3S73_RS08415 (E3S73_08415) | tscT | 1676823..1677143 (-) | 321 | WP_123090134.1 | type II toxin-antitoxin system toxin TscT | - |
| E3S73_RS08420 (E3S73_08420) | tscA | 1677146..1677355 (-) | 210 | WP_001058492.1 | type II toxin-antitoxin system antitoxin TscA | - |
| E3S73_RS08425 (E3S73_08425) | - | 1677348..1677494 (-) | 147 | WP_000784885.1 | hypothetical protein | - |
| E3S73_RS08430 (E3S73_08430) | - | 1677506..1677778 (-) | 273 | WP_053040301.1 | helix-turn-helix domain-containing protein | - |
| E3S73_RS08435 (E3S73_08435) | - | 1677779..1677991 (-) | 213 | WP_053040300.1 | helix-turn-helix domain-containing protein | - |
| E3S73_RS08440 (E3S73_08440) | - | 1678141..1678875 (+) | 735 | WP_000142630.1 | helix-turn-helix domain-containing protein | - |
| E3S73_RS08445 (E3S73_08445) | - | 1679174..1680388 (+) | 1215 | WP_123090135.1 | tyrosine-type recombinase/integrase | - |
| E3S73_RS08450 (E3S73_08450) | - | 1680389..1681222 (+) | 834 | WP_180372434.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S73_RS08455 (E3S73_08455) | rpsR | 1681454..1681696 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3S73_RS08460 (E3S73_08460) | ssbA | 1681748..1682251 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S73_RS08465 (E3S73_08465) | rpsF | 1682272..1682568 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| E3S73_RS08470 (E3S73_08470) | - | 1682812..1683003 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| E3S73_RS08475 (E3S73_08475) | ychF | 1683089..1684186 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| E3S73_RS08480 (E3S73_08480) | - | 1684198..1684401 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| E3S73_RS08485 (E3S73_08485) | - | 1684431..1685312 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| E3S73_RS08490 (E3S73_08490) | - | 1685466..1686311 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=416683 E3S73_RS08460 WP_000934799.1 1681748..1682251(-) (ssbA) [Staphylococcus aureus strain UP_322]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=416683 E3S73_RS08460 WP_000934799.1 1681748..1682251(-) (ssbA) [Staphylococcus aureus strain UP_322]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |