Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S75_RS13560 | Genome accession | NZ_CP047798 |
| Coordinates | 2746099..2746569 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain UP_378 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2725576..2751901 | 2746099..2746569 | within | 0 |
Gene organization within MGE regions
Location: 2725576..2751901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S75_RS13420 (E3S75_13420) | groES | 2725576..2725860 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| E3S75_RS13425 (E3S75_13425) | groL | 2725936..2727552 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3S75_RS13430 (E3S75_13430) | - | 2728084..2729391 (-) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| E3S75_RS13435 (E3S75_13435) | - | 2729787..2731010 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| E3S75_RS13440 (E3S75_13440) | - | 2731441..2732496 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| E3S75_RS13445 (E3S75_13445) | - | 2732518..2733537 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| E3S75_RS13450 (E3S75_13450) | sph | 2733794..2734618 (-) | 825 | Protein_2618 | sphingomyelin phosphodiesterase | - |
| E3S75_RS13455 (E3S75_13455) | - | 2734675..2735712 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| E3S75_RS13460 (E3S75_13460) | - | 2735771..2736235 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3S75_RS13465 (E3S75_13465) | - | 2736335..2736517 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3S75_RS13470 (E3S75_13470) | - | 2736721..2737062 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S75_RS13475 (E3S75_13475) | - | 2737068..2738000 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S75_RS13480 (E3S75_13480) | - | 2738016..2738729 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S75_RS13485 (E3S75_13485) | - | 2738692..2738865 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| E3S75_RS13490 (E3S75_13490) | - | 2738862..2739143 (+) | 282 | WP_000854074.1 | helix-turn-helix transcriptional regulator | - |
| E3S75_RS13495 (E3S75_13495) | - | 2739140..2739355 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S75_RS13500 (E3S75_13500) | - | 2739344..2739673 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3S75_RS13505 (E3S75_13505) | - | 2739724..2740476 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S75_RS13510 (E3S75_13510) | - | 2740492..2740689 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3S75_RS13515 (E3S75_13515) | - | 2740676..2741056 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| E3S75_RS13520 (E3S75_13520) | - | 2741111..2741434 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S75_RS13525 (E3S75_13525) | - | 2741431..2741592 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S75_RS13530 (E3S75_13530) | - | 2741687..2741989 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S75_RS13535 (E3S75_13535) | - | 2741994..2742254 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S75_RS13540 (E3S75_13540) | - | 2742263..2742526 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S75_RS13545 (E3S75_13545) | - | 2742535..2744478 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| E3S75_RS13550 (E3S75_13550) | - | 2744480..2745400 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S75_RS13555 (E3S75_13555) | - | 2745481..2746098 (+) | 618 | WP_160195252.1 | MBL fold metallo-hydrolase | - |
| E3S75_RS13560 (E3S75_13560) | ssbA | 2746099..2746569 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S75_RS13565 (E3S75_13565) | - | 2746599..2747492 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| E3S75_RS13570 (E3S75_13570) | - | 2747499..2747717 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3S75_RS13575 (E3S75_13575) | - | 2747726..2748130 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S75_RS13580 (E3S75_13580) | - | 2748143..2748511 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S75_RS13585 (E3S75_13585) | - | 2748515..2748757 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S75_RS13590 (E3S75_13590) | - | 2748772..2749026 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| E3S75_RS13660 | - | 2749013..2749183 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| E3S75_RS13595 (E3S75_13595) | - | 2749176..2749712 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| E3S75_RS13600 (E3S75_13600) | - | 2749749..2749994 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3S75_RS13605 (E3S75_13605) | - | 2749991..2750197 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| E3S75_RS13610 (E3S75_13610) | - | 2750194..2750580 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| E3S75_RS13615 (E3S75_13615) | rinB | 2750577..2750726 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S75_RS13620 (E3S75_13620) | - | 2750726..2750926 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| E3S75_RS13625 (E3S75_13625) | - | 2750954..2751370 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3S75_RS13630 (E3S75_13630) | - | 2751602..2751901 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=416652 E3S75_RS13560 WP_000610648.1 2746099..2746569(+) (ssbA) [Staphylococcus aureus strain UP_378]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416652 E3S75_RS13560 WP_000610648.1 2746099..2746569(+) (ssbA) [Staphylococcus aureus strain UP_378]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |