Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S75_RS08290 | Genome accession | NZ_CP047798 |
| Coordinates | 1641655..1642158 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UP_378 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1621844..1646218 | 1641655..1642158 | within | 0 |
Gene organization within MGE regions
Location: 1621844..1646218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S75_RS08145 (E3S75_08145) | - | 1621844..1622107 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| E3S75_RS08150 (E3S75_08150) | - | 1622245..1622817 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| E3S75_RS08155 (E3S75_08155) | - | 1622998..1623366 (-) | 369 | WP_000849162.1 | YxeA family protein | - |
| E3S75_RS08160 (E3S75_08160) | - | 1623732..1624349 (-) | 618 | WP_029549319.1 | exotoxin beta-grasp domain-containing protein | - |
| E3S75_RS08165 (E3S75_08165) | - | 1624548..1625262 (+) | 715 | Protein_1575 | tyrosine-type recombinase/integrase | - |
| E3S75_RS08170 (E3S75_08170) | - | 1625268..1626275 (+) | 1008 | Protein_1576 | Abi family protein | - |
| E3S75_RS13700 | - | 1627039..1627218 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| E3S75_RS08175 (E3S75_08175) | - | 1627234..1627746 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| E3S75_RS08180 (E3S75_08180) | - | 1627864..1628265 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| E3S75_RS08185 (E3S75_08185) | - | 1628443..1629411 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| E3S75_RS08190 (E3S75_08190) | - | 1629688..1630257 (-) | 570 | WP_001293076.1 | terminase small subunit | - |
| E3S75_RS08195 (E3S75_08195) | - | 1630254..1630595 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| E3S75_RS08200 (E3S75_08200) | - | 1630598..1631125 (-) | 528 | WP_000771368.1 | spore coat protein | - |
| E3S75_RS08205 (E3S75_08205) | - | 1631176..1631394 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| E3S75_RS08210 (E3S75_08210) | - | 1631412..1631990 (-) | 579 | WP_000846285.1 | hypothetical protein | - |
| E3S75_RS08215 (E3S75_08215) | - | 1632002..1632343 (-) | 342 | WP_001190608.1 | hypothetical protein | - |
| E3S75_RS08220 (E3S75_08220) | - | 1632860..1633501 (-) | 642 | WP_160195178.1 | pathogenicity island protein | - |
| E3S75_RS08225 (E3S75_08225) | - | 1633503..1633775 (-) | 273 | WP_001663080.1 | hypothetical protein | - |
| E3S75_RS08230 (E3S75_08230) | - | 1633762..1634565 (-) | 804 | WP_000148373.1 | bifunctional DNA primase/polymerase | - |
| E3S75_RS08235 (E3S75_08235) | - | 1634736..1636349 (-) | 1614 | WP_001663081.1 | hypothetical protein | - |
| E3S75_RS08240 (E3S75_08240) | tscT | 1636424..1636720 (-) | 297 | WP_001663082.1 | type II toxin-antitoxin system toxin TscT | - |
| E3S75_RS08245 (E3S75_08245) | - | 1636721..1637104 (-) | 384 | WP_001663083.1 | hypothetical protein | - |
| E3S75_RS08250 (E3S75_08250) | - | 1637106..1637309 (-) | 204 | WP_001662724.1 | hypothetical protein | - |
| E3S75_RS08255 (E3S75_08255) | - | 1637294..1637449 (-) | 156 | WP_000784883.1 | hypothetical protein | - |
| E3S75_RS08260 (E3S75_08260) | - | 1637461..1637733 (-) | 273 | WP_001663084.1 | hypothetical protein | - |
| E3S75_RS08265 (E3S75_08265) | - | 1637766..1637978 (-) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| E3S75_RS08270 (E3S75_08270) | - | 1638114..1638818 (+) | 705 | WP_223200752.1 | helix-turn-helix domain-containing protein | - |
| E3S75_RS08275 (E3S75_08275) | - | 1639097..1640311 (+) | 1215 | WP_160195179.1 | tyrosine-type recombinase/integrase | - |
| E3S75_RS08280 (E3S75_08280) | - | 1640335..1641132 (+) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S75_RS08285 (E3S75_08285) | rpsR | 1641361..1641603 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3S75_RS08290 (E3S75_08290) | ssbA | 1641655..1642158 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S75_RS08295 (E3S75_08295) | rpsF | 1642179..1642475 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| E3S75_RS08300 (E3S75_08300) | - | 1642719..1642910 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| E3S75_RS08305 (E3S75_08305) | ychF | 1642996..1644093 (-) | 1098 | WP_001218729.1 | redox-regulated ATPase YchF | - |
| E3S75_RS08310 (E3S75_08310) | - | 1644105..1644308 (-) | 204 | WP_000157346.1 | DUF951 domain-containing protein | - |
| E3S75_RS08315 (E3S75_08315) | - | 1644338..1645219 (-) | 882 | WP_000373079.1 | mechanosensitive ion channel family protein | - |
| E3S75_RS08320 (E3S75_08320) | - | 1645373..1646218 (-) | 846 | WP_001621659.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=416643 E3S75_RS08290 WP_000934799.1 1641655..1642158(-) (ssbA) [Staphylococcus aureus strain UP_378]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=416643 E3S75_RS08290 WP_000934799.1 1641655..1642158(-) (ssbA) [Staphylococcus aureus strain UP_378]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATC
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATC
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |