Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PPS_RS02475 Genome accession   NC_015733
Coordinates   558942..559484 (+) Length   180 a.a.
NCBI ID   WP_013970644.1    Uniprot ID   V9UTH0
Organism   Pseudomonas putida S16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 553942..564484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPS_RS02460 (PPS_0478) bfr 553993..554457 (+) 465 WP_003257116.1 bacterioferritin -
  PPS_RS02465 (PPS_0479) uvrA 554574..557408 (-) 2835 WP_013970642.1 excinuclease ABC subunit UvrA -
  PPS_RS02470 (PPS_0480) - 557538..558932 (+) 1395 WP_013970643.1 MFS transporter -
  PPS_RS02475 (PPS_0481) ssb 558942..559484 (+) 543 WP_013970644.1 single-stranded DNA-binding protein Machinery gene
  PPS_RS02480 (PPS_0482) - 559628..561010 (-) 1383 WP_044046877.1 PLP-dependent aminotransferase family protein -
  PPS_RS02485 (PPS_0483) - 561210..561995 (+) 786 WP_044046878.1 TSUP family transporter -
  PPS_RS02490 (PPS_0484) - 562017..562778 (+) 762 WP_013970647.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19957.07 Da        Isoelectric Point: 5.9286

>NTDB_id=41664 PPS_RS02475 WP_013970644.1 558942..559484(+) (ssb) [Pseudomonas putida S16]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQNQQQGGDPYNQGGGNYGGGQPQQYNQAPRQQAPRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=41664 PPS_RS02475 WP_013970644.1 558942..559484(+) (ssb) [Pseudomonas putida S16]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATATCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGAACCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGCCAGCCGCAGCAGTACAACCAGGCCCCACGCCAGCAGGCCCCGCGCCCGCAACAGGCTCCTCAGCGCCCGGCCCCG
CAGCAGCCAGCCCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.452

100

0.583
  ssb Neisseria meningitidis MC58

49.727

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.727

100

0.506
  ssb Glaesserella parasuis strain SC1401

45.226

100

0.5

Multiple sequence alignment