Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E3S78_RS13605 Genome accession   NZ_CP047796
Coordinates   2774642..2775088 (+) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_462     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2769642..2780088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S78_RS13570 (E3S78_13570) - 2770136..2770339 (+) 204 WP_000087561.1 YqgQ family protein -
  E3S78_RS13575 (E3S78_13575) - 2770336..2771322 (+) 987 WP_000161314.1 ROK family glucokinase -
  E3S78_RS13580 (E3S78_13580) - 2771322..2771651 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3S78_RS13585 (E3S78_13585) - 2771648..2772271 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3S78_RS13590 (E3S78_13590) comGA 2772323..2773297 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  E3S78_RS13595 (E3S78_13595) comGB 2773269..2774339 (+) 1071 WP_160176226.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3S78_RS13600 (E3S78_13600) comGC 2774353..2774664 (+) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  E3S78_RS13605 (E3S78_13605) comGD 2774642..2775088 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3S78_RS13610 (E3S78_13610) comGE 2775075..2775374 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3S78_RS13615 (E3S78_13615) comGF 2775292..2775789 (+) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3S78_RS13620 (E3S78_13620) - 2775886..2776032 (+) 147 WP_001789879.1 hypothetical protein -
  E3S78_RS13625 (E3S78_13625) - 2776022..2776546 (+) 525 WP_001015125.1 shikimate kinase -
  E3S78_RS13630 (E3S78_13630) gcvT 2776705..2777796 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  E3S78_RS13635 (E3S78_13635) gcvPA 2777816..2779162 (+) 1347 WP_063636320.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=416567 E3S78_RS13605 WP_001791207.1 2774642..2775088(+) (comGD) [Staphylococcus aureus strain UP_462]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=416567 E3S78_RS13605 WP_001791207.1 2774642..2775088(+) (comGD) [Staphylococcus aureus strain UP_462]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment