Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NIT79A3_RS15660 Genome accession   NC_015731
Coordinates   3356064..3356513 (-) Length   149 a.a.
NCBI ID   WP_013967117.1    Uniprot ID   F8GKP0
Organism   Nitrosomonas sp. Is79A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3351064..3361513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIT79A3_RS15630 (Nit79A3_3165) - 3351507..3352367 (+) 861 WP_013967110.1 MBL fold metallo-hydrolase -
  NIT79A3_RS15635 (Nit79A3_3166) - 3352491..3353504 (-) 1014 WP_013967111.1 DnaJ domain-containing protein -
  NIT79A3_RS15640 (Nit79A3_3168) - 3353854..3354039 (+) 186 WP_013967113.1 hemin uptake protein HemP -
  NIT79A3_RS15645 (Nit79A3_3169) bfr 3354255..3354719 (+) 465 WP_013967114.1 bacterioferritin -
  NIT79A3_RS18010 (Nit79A3_3170) - 3354942..3355508 (+) 567 WP_198009369.1 DUF2325 domain-containing protein -
  NIT79A3_RS15660 (Nit79A3_3172) ssb 3356064..3356513 (-) 450 WP_013967117.1 single-stranded DNA-binding protein Machinery gene
  NIT79A3_RS15665 (Nit79A3_3173) - 3356514..3357872 (-) 1359 WP_013967118.1 MFS transporter -
  NIT79A3_RS15670 (Nit79A3_3174) uvrA 3357966..3360785 (+) 2820 WP_013967119.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16700.53 Da        Isoelectric Point: 5.3363

>NTDB_id=41655 NIT79A3_RS15660 WP_013967117.1 3356064..3356513(-) (ssb) [Nitrosomonas sp. Is79A3]
MASVNKVILIGNLGKDPETRYMSNGDAVTNITLATTDTWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRPVYIEGR
LETRKWTDKNGVERYTTDIIASDMKMLGNRSGSGSFESPDHEEVNSAPNRSSSAKSAGGFDDMDDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=41655 NIT79A3_RS15660 WP_013967117.1 3356064..3356513(-) (ssb) [Nitrosomonas sp. Is79A3]
ATGGCATCAGTCAATAAAGTTATACTCATTGGTAACTTGGGAAAAGACCCGGAAACTCGTTACATGTCAAATGGTGATGC
GGTAACGAATATTACATTGGCAACGACAGATACCTGGAAAGACAAGAATGGTGAGAAACAGGAAAAGACTGAATGGCATC
GCGTAACCTTTTATCGCAAGCTCGCAGAAATTGCGGGGGAATACTTAAAGAAAGGCCGCCCTGTGTATATAGAGGGCAGG
CTGGAAACCCGGAAATGGACTGATAAAAATGGTGTAGAACGTTATACGACGGATATTATTGCAAGCGACATGAAAATGTT
GGGCAATCGATCAGGAAGCGGTAGCTTTGAGTCACCTGATCATGAAGAAGTAAATTCTGCTCCTAACCGCTCTTCTTCAG
CTAAGAGTGCAGGTGGATTTGATGATATGGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8GKP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.604
  ssb Neisseria meningitidis MC58

47.977

100

0.557
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.55
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.517

Multiple sequence alignment