Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S78_RS05865 | Genome accession | NZ_CP047796 |
| Coordinates | 1214551..1215054 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UP_462 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1194930..1219114 | 1214551..1215054 | within | 0 |
Gene organization within MGE regions
Location: 1194930..1219114
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S78_RS05720 (E3S78_05720) | - | 1194930..1195184 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| E3S78_RS05725 (E3S78_05725) | - | 1195478..1195741 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| E3S78_RS05730 (E3S78_05730) | - | 1195879..1196451 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| E3S78_RS05735 (E3S78_05735) | - | 1196631..1196999 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| E3S78_RS05740 (E3S78_05740) | - | 1197236..1197950 (+) | 715 | Protein_1121 | tyrosine-type recombinase/integrase | - |
| E3S78_RS05745 (E3S78_05745) | - | 1197956..1198963 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| E3S78_RS14205 | - | 1199727..1199906 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| E3S78_RS05750 (E3S78_05750) | - | 1199922..1200434 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| E3S78_RS05755 (E3S78_05755) | - | 1200552..1200953 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| E3S78_RS05760 (E3S78_05760) | - | 1201131..1202099 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| E3S78_RS05765 (E3S78_05765) | - | 1202376..1202945 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| E3S78_RS05770 (E3S78_05770) | - | 1202942..1203154 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| E3S78_RS05775 (E3S78_05775) | - | 1203286..1203813 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| E3S78_RS05780 (E3S78_05780) | - | 1203866..1204519 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| E3S78_RS05785 (E3S78_05785) | - | 1204550..1204891 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| E3S78_RS05790 (E3S78_05790) | - | 1205427..1206068 (-) | 642 | WP_115300115.1 | pathogenicity island protein | - |
| E3S78_RS05795 (E3S78_05795) | - | 1206070..1206333 (-) | 264 | WP_001003076.1 | hypothetical protein | - |
| E3S78_RS05800 (E3S78_05800) | - | 1206335..1206658 (-) | 324 | WP_236650833.1 | pathogenicity island protein | - |
| E3S78_RS05805 (E3S78_05805) | - | 1206954..1208324 (-) | 1371 | WP_115300114.1 | phage/plasmid primase, P4 family | - |
| E3S78_RS05810 (E3S78_05810) | - | 1208336..1209205 (-) | 870 | WP_115300113.1 | primase alpha helix C-terminal domain-containing protein | - |
| E3S78_RS05815 (E3S78_05815) | tscT | 1209269..1209589 (-) | 321 | WP_115300112.1 | type II toxin-antitoxin system toxin TscT | - |
| E3S78_RS05820 (E3S78_05820) | - | 1209590..1209949 (-) | 360 | WP_001038252.1 | hypothetical protein | - |
| E3S78_RS05825 (E3S78_05825) | tscA | 1209951..1210163 (-) | 213 | WP_001058496.1 | type II toxin-antitoxin system antitoxin TscA | - |
| E3S78_RS05830 (E3S78_05830) | - | 1210156..1210302 (-) | 147 | WP_000784893.1 | hypothetical protein | - |
| E3S78_RS05835 (E3S78_05835) | - | 1210314..1210586 (-) | 273 | WP_115300111.1 | helix-turn-helix domain-containing protein | - |
| E3S78_RS05840 (E3S78_05840) | - | 1210587..1210799 (-) | 213 | WP_044292240.1 | helix-turn-helix domain-containing protein | - |
| E3S78_RS05845 (E3S78_05845) | - | 1210985..1211704 (+) | 720 | WP_115300110.1 | helix-turn-helix domain-containing protein | - |
| E3S78_RS05850 (E3S78_05850) | - | 1211979..1213193 (+) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| E3S78_RS05855 (E3S78_05855) | - | 1213306..1214025 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S78_RS05860 (E3S78_05860) | rpsR | 1214257..1214499 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3S78_RS05865 (E3S78_05865) | ssbA | 1214551..1215054 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S78_RS05870 (E3S78_05870) | rpsF | 1215075..1215371 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| E3S78_RS05875 (E3S78_05875) | - | 1215615..1215806 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| E3S78_RS05880 (E3S78_05880) | ychF | 1215892..1216989 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| E3S78_RS05885 (E3S78_05885) | - | 1217001..1217204 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| E3S78_RS05890 (E3S78_05890) | - | 1217234..1218115 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| E3S78_RS05895 (E3S78_05895) | - | 1218269..1219114 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=416542 E3S78_RS05865 WP_000934799.1 1214551..1215054(-) (ssbA) [Staphylococcus aureus strain UP_462]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=416542 E3S78_RS05865 WP_000934799.1 1214551..1215054(-) (ssbA) [Staphylococcus aureus strain UP_462]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |