Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S79_RS09640 | Genome accession | NZ_CP047795 |
| Coordinates | 1967332..1967802 (-) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain UP_490 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1958755..1988439 | 1967332..1967802 | within | 0 |
Gene organization within MGE regions
Location: 1958755..1988439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S79_RS09565 (E3S79_09565) | scn | 1958755..1959105 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| E3S79_RS09570 (E3S79_09570) | - | 1959790..1960239 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| E3S79_RS09575 (E3S79_09575) | - | 1960334..1960672 (-) | 339 | Protein_1854 | SH3 domain-containing protein | - |
| E3S79_RS09580 (E3S79_09580) | sak | 1961319..1961810 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| E3S79_RS09585 (E3S79_09585) | - | 1962001..1962756 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| E3S79_RS09590 (E3S79_09590) | - | 1962768..1963022 (-) | 255 | WP_000611512.1 | phage holin | - |
| E3S79_RS09595 (E3S79_09595) | - | 1963074..1963181 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| E3S79_RS09600 (E3S79_09600) | pepG1 | 1963234..1963368 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| E3S79_RS09605 (E3S79_09605) | - | 1963560..1963856 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| E3S79_RS09610 (E3S79_09610) | - | 1963914..1964186 (-) | 273 | WP_064138970.1 | hypothetical protein | - |
| E3S79_RS09620 (E3S79_09620) | - | 1965360..1965758 (-) | 399 | WP_064140498.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S79_RS09625 (E3S79_09625) | - | 1965771..1966175 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S79_RS09630 (E3S79_09630) | - | 1966184..1966402 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3S79_RS09635 (E3S79_09635) | - | 1966409..1967302 (-) | 894 | WP_000148321.1 | DnaD domain protein | - |
| E3S79_RS09640 (E3S79_09640) | ssbA | 1967332..1967802 (-) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S79_RS09645 (E3S79_09645) | - | 1967803..1968420 (-) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| E3S79_RS09650 (E3S79_09650) | - | 1968501..1969421 (-) | 921 | WP_031883394.1 | recombinase RecT | - |
| E3S79_RS09655 (E3S79_09655) | - | 1969423..1971366 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| E3S79_RS09660 (E3S79_09660) | - | 1971375..1971638 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S79_RS09665 (E3S79_09665) | - | 1971647..1971907 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3S79_RS09670 (E3S79_09670) | - | 1971912..1972214 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S79_RS09675 (E3S79_09675) | - | 1972309..1972470 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3S79_RS09680 (E3S79_09680) | - | 1972467..1972790 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3S79_RS09685 (E3S79_09685) | - | 1972845..1973225 (+) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| E3S79_RS09690 (E3S79_09690) | - | 1973212..1973409 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3S79_RS09695 (E3S79_09695) | - | 1973425..1974177 (-) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S79_RS09700 (E3S79_09700) | - | 1974228..1974557 (+) | 330 | WP_000128907.1 | hypothetical protein | - |
| E3S79_RS09705 (E3S79_09705) | - | 1974546..1974761 (-) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3S79_RS09710 (E3S79_09710) | - | 1974795..1975040 (-) | 246 | WP_043859301.1 | helix-turn-helix transcriptional regulator | - |
| E3S79_RS09715 (E3S79_09715) | - | 1975037..1975210 (-) | 174 | WP_031908048.1 | hypothetical protein | - |
| E3S79_RS09720 (E3S79_09720) | - | 1975173..1975886 (+) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3S79_RS09725 (E3S79_09725) | - | 1975902..1976834 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3S79_RS09730 (E3S79_09730) | - | 1976840..1977181 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3S79_RS09735 (E3S79_09735) | - | 1977385..1977567 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| E3S79_RS09740 (E3S79_09740) | - | 1977667..1978131 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| E3S79_RS09745 (E3S79_09745) | - | 1978190..1979227 (+) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| E3S79_RS09750 (E3S79_09750) | sph | 1979284..1980108 (+) | 825 | Protein_1889 | sphingomyelin phosphodiesterase | - |
| E3S79_RS09755 (E3S79_09755) | - | 1980365..1981384 (-) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| E3S79_RS09760 (E3S79_09760) | - | 1981406..1982461 (-) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| E3S79_RS09765 (E3S79_09765) | - | 1982892..1984115 (+) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| E3S79_RS09770 (E3S79_09770) | - | 1984624..1985931 (+) | 1308 | WP_001045070.1 | TrkH family potassium uptake protein | - |
| E3S79_RS09775 (E3S79_09775) | groL | 1986463..1988079 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| E3S79_RS09780 (E3S79_09780) | groES | 1988155..1988439 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=416521 E3S79_RS09640 WP_000610648.1 1967332..1967802(-) (ssbA) [Staphylococcus aureus strain UP_490]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416521 E3S79_RS09640 WP_000610648.1 1967332..1967802(-) (ssbA) [Staphylococcus aureus strain UP_490]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |