Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S88_RS13575 | Genome accession | NZ_CP047792 |
| Coordinates | 2754037..2754507 (+) | Length | 156 a.a. |
| NCBI ID | WP_160194611.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_794 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2733552..2760733 | 2754037..2754507 | within | 0 |
Gene organization within MGE regions
Location: 2733552..2760733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S88_RS13435 (E3S88_13435) | - | 2733552..2735084 (-) | 1533 | WP_000665722.1 | sodium:solute symporter | - |
| E3S88_RS13440 (E3S88_13440) | - | 2735124..2736005 (-) | 882 | WP_001030738.1 | N-acetylneuraminate lyase | - |
| E3S88_RS13445 (E3S88_13445) | - | 2736164..2737024 (+) | 861 | WP_124781136.1 | ROK family protein | - |
| E3S88_RS13450 (E3S88_13450) | - | 2737301..2738101 (-) | 801 | WP_000667382.1 | MurR/RpiR family transcriptional regulator | - |
| E3S88_RS13455 (E3S88_13455) | - | 2738241..2738909 (+) | 669 | WP_000936721.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| E3S88_RS13460 (E3S88_13460) | - | 2739039..2740352 (-) | 1314 | WP_124781138.1 | YjiH family protein | - |
| E3S88_RS13465 (E3S88_13465) | lip2 | 2740770..2742689 (+) | 1920 | Protein_2622 | YSIRK domain-containing triacylglycerol lipase Lip2/Geh | - |
| E3S88_RS13470 (E3S88_13470) | - | 2742783..2743988 (-) | 1206 | WP_000264187.1 | tyrosine-type recombinase/integrase | - |
| E3S88_RS13475 (E3S88_13475) | - | 2744099..2744713 (+) | 615 | WP_000191464.1 | hypothetical protein | - |
| E3S88_RS13480 (E3S88_13480) | - | 2744710..2744856 (-) | 147 | WP_001795334.1 | hypothetical protein | - |
| E3S88_RS13485 (E3S88_13485) | - | 2744893..2745075 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| E3S88_RS13490 (E3S88_13490) | - | 2745145..2745864 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| E3S88_RS13495 (E3S88_13495) | - | 2746006..2746224 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| E3S88_RS13500 (E3S88_13500) | - | 2746239..2746547 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| E3S88_RS13505 (E3S88_13505) | - | 2746704..2747453 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S88_RS13510 (E3S88_13510) | - | 2747466..2747726 (+) | 261 | WP_000435343.1 | hypothetical protein | - |
| E3S88_RS13825 | - | 2747750..2747905 (-) | 156 | Protein_2632 | hypothetical protein | - |
| E3S88_RS13520 (E3S88_13520) | - | 2747960..2748199 (+) | 240 | WP_001294156.1 | hypothetical protein | - |
| E3S88_RS13525 (E3S88_13525) | - | 2748526..2748852 (+) | 327 | WP_001025595.1 | hypothetical protein | - |
| E3S88_RS13830 | - | 2748849..2748948 (+) | 100 | Protein_2635 | hypothetical protein | - |
| E3S88_RS13535 (E3S88_13535) | - | 2749097..2749360 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| E3S88_RS13540 (E3S88_13540) | - | 2749372..2749533 (+) | 162 | WP_000066014.1 | DUF1270 domain-containing protein | - |
| E3S88_RS13545 (E3S88_13545) | - | 2749626..2749928 (+) | 303 | WP_053007319.1 | DUF2482 family protein | - |
| E3S88_RS13550 (E3S88_13550) | - | 2749932..2750192 (+) | 261 | WP_160194610.1 | DUF1108 family protein | - |
| E3S88_RS13555 (E3S88_13555) | - | 2750201..2750464 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S88_RS13560 (E3S88_13560) | - | 2750473..2752416 (+) | 1944 | WP_160194570.1 | AAA family ATPase | - |
| E3S88_RS13565 (E3S88_13565) | - | 2752418..2753338 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3S88_RS13570 (E3S88_13570) | - | 2753419..2754036 (+) | 618 | WP_078092708.1 | MBL fold metallo-hydrolase | - |
| E3S88_RS13575 (E3S88_13575) | ssbA | 2754037..2754507 (+) | 471 | WP_160194611.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S88_RS13580 (E3S88_13580) | - | 2754537..2755421 (+) | 885 | WP_000148312.1 | DnaD domain protein | - |
| E3S88_RS13585 (E3S88_13585) | - | 2755428..2755646 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S88_RS13590 (E3S88_13590) | - | 2755655..2756059 (+) | 405 | WP_160194612.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S88_RS13595 (E3S88_13595) | - | 2756072..2756443 (+) | 372 | WP_160194613.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S88_RS13600 (E3S88_13600) | - | 2756444..2756692 (+) | 249 | WP_160194614.1 | phi PVL orf 51-like protein | - |
| E3S88_RS13605 (E3S88_13605) | - | 2756707..2756955 (+) | 249 | WP_053007325.1 | DUF1024 family protein | - |
| E3S88_RS13610 (E3S88_13610) | - | 2756948..2757484 (+) | 537 | WP_160194615.1 | dUTPase | - |
| E3S88_RS13615 (E3S88_13615) | - | 2757521..2757766 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3S88_RS13620 (E3S88_13620) | - | 2757763..2757969 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3S88_RS13625 (E3S88_13625) | - | 2757966..2758352 (+) | 387 | WP_000592226.1 | hypothetical protein | - |
| E3S88_RS13630 (E3S88_13630) | rinB | 2758349..2758498 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S88_RS13635 (E3S88_13635) | - | 2758498..2758698 (+) | 201 | WP_001813913.1 | DUF1514 family protein | - |
| E3S88_RS13640 (E3S88_13640) | - | 2758721..2759209 (+) | 489 | WP_160194616.1 | hypothetical protein | - |
| E3S88_RS13645 (E3S88_13645) | - | 2759324..2759776 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| E3S88_RS13650 (E3S88_13650) | - | 2759792..2760136 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| E3S88_RS13655 (E3S88_13655) | - | 2760266..2760733 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17700.54 Da Isoelectric Point: 4.7821
>NTDB_id=416403 E3S88_RS13575 WP_160194611.1 2754037..2754507(+) (ssbA) [Staphylococcus aureus strain UP_794]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416403 E3S88_RS13575 WP_160194611.1 2754037..2754507(+) (ssbA) [Staphylococcus aureus strain UP_794]
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACGCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACGCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |