Detailed information NTG0416403

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: H7788_RS08715
• Genome accession: NZ_CP060647
• Coordinates: 1763639..1764745 (+)
• Length: 368 a.a.
• NCBI ID: WP_011185108.1
• Uniprot ID: Q5X9A5
• Organism: Streptococcus pyogenes strain TSPY136
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1758639..1769745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7788_RS08690 (H7788_08680)	pgsA	1758748..1759290 (-)	543	WP_002991432.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
H7788_RS08695 (H7788_08685)	-	1759304..1760329 (-)	1026	WP_030127516.1	helix-turn-helix domain-containing protein	-
H7788_RS08700 (H7788_08690)	yfmH	1760379..1761668 (-)	1290	WP_030127515.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
H7788_RS08705 (H7788_08695)	yfmF	1761670..1762914 (-)	1245	WP_030127514.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
H7788_RS08710 (H7788_08700)	yaaA	1763224..1763637 (+)	414	WP_011889257.1	S4 domain-containing protein YaaA	-
H7788_RS08715 (H7788_08705)	recF	1763639..1764745 (+)	1107	WP_011185108.1	DNA replication/repair protein RecF	Machinery gene
H7788_RS08720 (H7788_08710)	-	1764801..1765664 (-)	864	WP_002991450.1	GRP family sugar transporter	-
H7788_RS08725 (H7788_08715)	guaB	1765867..1767348 (-)	1482	WP_030127512.1	IMP dehydrogenase	-
H7788_RS08730 (H7788_08720)	trpS	1767626..1768648 (-)	1023	WP_002991455.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41795.71 Da
• Isoelectric Point: 7.8294

>NTDB_id=416403 H7788_RS08715 WP_011185108.1 1763639..1764745(+) (recF) [Streptococcus pyogenes strain TSPY136]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide

• Length: 1107 bp

>NTDB_id=416403 H7788_RS08715 WP_011185108.1 1763639..1764745(+) (recF) [Streptococcus pyogenes strain TSPY136]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTCCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

3D structure

• AlphaFold DB: Q5X9A5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	62.842	99.457	0.625
recF	Bacillus subtilis subsp. subtilis str. 168	45.722	100	0.465