Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S89_RS04150 | Genome accession | NZ_CP047791 |
| Coordinates | 821353..821823 (+) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_818 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 806459..853512 | 821353..821823 | within | 0 |
Gene organization within MGE regions
Location: 806459..853512
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S89_RS04040 (E3S89_04040) | - | 806459..807388 (-) | 930 | WP_000757584.1 | glycerophosphodiester phosphodiesterase | - |
| E3S89_RS04045 (E3S89_04045) | - | 807627..807881 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| E3S89_RS04050 (E3S89_04050) | - | 807884..808273 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| E3S89_RS04055 (E3S89_04055) | rsmD | 808343..808885 (+) | 543 | WP_001263793.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| E3S89_RS04060 (E3S89_04060) | coaD | 808887..809369 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| E3S89_RS04065 (E3S89_04065) | - | 809431..810570 (-) | 1140 | WP_160199004.1 | nucleotidyltransferase | - |
| E3S89_RS04070 (E3S89_04070) | - | 810697..811254 (+) | 558 | WP_000872158.1 | YceD family protein | - |
| E3S89_RS04075 (E3S89_04075) | rpmF | 811334..811507 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| E3S89_RS04080 (E3S89_04080) | - | 811624..813009 (-) | 1386 | WP_047230699.1 | recombinase family protein | - |
| E3S89_RS04085 (E3S89_04085) | - | 813202..813906 (-) | 705 | WP_017804779.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S89_RS04090 (E3S89_04090) | - | 813942..814127 (-) | 186 | WP_024936996.1 | hypothetical protein | - |
| E3S89_RS14495 | - | 814124..814270 (-) | 147 | WP_001049401.1 | hypothetical protein | - |
| E3S89_RS04095 (E3S89_04095) | - | 814282..815004 (-) | 723 | WP_160199005.1 | XRE family transcriptional regulator | - |
| E3S89_RS04100 (E3S89_04100) | - | 815146..815364 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| E3S89_RS04105 (E3S89_04105) | - | 815380..816168 (+) | 789 | WP_047230698.1 | phage antirepressor | - |
| E3S89_RS04110 (E3S89_04110) | - | 816185..816379 (+) | 195 | WP_047230697.1 | hypothetical protein | - |
| E3S89_RS04115 (E3S89_04115) | - | 816583..816813 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| E3S89_RS04120 (E3S89_04120) | - | 816993..817154 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| E3S89_RS04125 (E3S89_04125) | - | 817248..817508 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| E3S89_RS04130 (E3S89_04130) | - | 817517..817780 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S89_RS04135 (E3S89_04135) | - | 817777..819732 (+) | 1956 | WP_201747856.1 | AAA family ATPase | - |
| E3S89_RS04140 (E3S89_04140) | - | 819734..820654 (+) | 921 | WP_000138472.1 | recombinase RecT | - |
| E3S89_RS04145 (E3S89_04145) | - | 820735..821352 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| E3S89_RS04150 (E3S89_04150) | ssbA | 821353..821823 (+) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S89_RS04155 (E3S89_04155) | - | 821853..822704 (+) | 852 | WP_160199006.1 | DnaD domain protein | - |
| E3S89_RS04160 (E3S89_04160) | - | 822711..822929 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S89_RS04165 (E3S89_04165) | - | 822938..823342 (+) | 405 | WP_061641040.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S89_RS04170 (E3S89_04170) | - | 823355..823726 (+) | 372 | WP_061650592.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S89_RS04175 (E3S89_04175) | - | 823727..823975 (+) | 249 | WP_001126839.1 | phi PVL orf 51-like protein | - |
| E3S89_RS04180 (E3S89_04180) | - | 824039..824386 (+) | 348 | WP_000982695.1 | YopX family protein | - |
| E3S89_RS04185 (E3S89_04185) | - | 824383..824772 (+) | 390 | WP_000219085.1 | acetyltransferase | - |
| E3S89_RS04190 (E3S89_04190) | - | 824765..825019 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| E3S89_RS04195 (E3S89_04195) | - | 825006..825176 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| E3S89_RS04200 (E3S89_04200) | - | 825169..825702 (+) | 534 | WP_000185642.1 | dUTP diphosphatase | - |
| E3S89_RS04205 (E3S89_04205) | - | 825739..826026 (+) | 288 | WP_000195801.1 | DUF1381 domain-containing protein | - |
| E3S89_RS04210 (E3S89_04210) | - | 826019..826255 (+) | 237 | WP_000608279.1 | hypothetical protein | - |
| E3S89_RS04215 (E3S89_04215) | - | 826245..826634 (+) | 390 | WP_025174390.1 | hypothetical protein | - |
| E3S89_RS04220 (E3S89_04220) | rinB | 826631..826804 (+) | 174 | WP_000595303.1 | transcriptional activator RinB | - |
| E3S89_RS04225 (E3S89_04225) | - | 826805..827206 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| E3S89_RS04230 (E3S89_04230) | - | 827558..828052 (+) | 495 | WP_000594087.1 | terminase small subunit | - |
| E3S89_RS04235 (E3S89_04235) | - | 828045..829268 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| E3S89_RS04240 (E3S89_04240) | - | 829265..830689 (+) | 1425 | WP_000177422.1 | phage portal protein | - |
| E3S89_RS04245 (E3S89_04245) | - | 830658..831611 (+) | 954 | WP_160199007.1 | phage head morphogenesis protein | - |
| E3S89_RS04250 (E3S89_04250) | - | 831613..831819 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| E3S89_RS04255 (E3S89_04255) | - | 831922..832506 (+) | 585 | WP_001019219.1 | DUF4355 domain-containing protein | - |
| E3S89_RS04260 (E3S89_04260) | - | 832523..833437 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| E3S89_RS14500 | - | 833449..833592 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| E3S89_RS04265 (E3S89_04265) | - | 833598..833948 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| E3S89_RS04270 (E3S89_04270) | - | 833960..834295 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| E3S89_RS04275 (E3S89_04275) | - | 834282..834695 (+) | 414 | WP_001151330.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| E3S89_RS04280 (E3S89_04280) | - | 834708..835133 (+) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| E3S89_RS04285 (E3S89_04285) | - | 835134..835691 (+) | 558 | WP_000057582.1 | tail protein | - |
| E3S89_RS04290 (E3S89_04290) | - | 835758..836264 (+) | 507 | WP_061839760.1 | tail assembly chaperone | - |
| E3S89_RS04295 (E3S89_04295) | - | 836309..836593 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| E3S89_RS14765 | - | 836597..836795 (+) | 199 | Protein_841 | hypothetical protein | - |
| E3S89_RS04300 (E3S89_04300) | - | 836903..839740 (+) | 2838 | WP_371411443.1 | terminase | - |
| E3S89_RS04305 (E3S89_04305) | - | 839755..840696 (+) | 942 | WP_015984522.1 | phage tail domain-containing protein | - |
| E3S89_RS04310 (E3S89_04310) | - | 840707..842593 (+) | 1887 | WP_001122001.1 | SGNH/GDSL hydrolase family protein | - |
| E3S89_RS04315 (E3S89_04315) | - | 842606..844504 (+) | 1899 | WP_160199008.1 | hypothetical protein | - |
| E3S89_RS04320 (E3S89_04320) | - | 844504..846327 (+) | 1824 | WP_033861311.1 | phage baseplate upper protein | - |
| E3S89_RS04325 (E3S89_04325) | - | 846327..846704 (+) | 378 | WP_000705914.1 | DUF2977 domain-containing protein | - |
| E3S89_RS04330 (E3S89_04330) | - | 846714..846887 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| E3S89_RS04335 (E3S89_04335) | - | 846928..847227 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| E3S89_RS04340 (E3S89_04340) | - | 847364..849238 (+) | 1875 | WP_033861356.1 | glucosaminidase domain-containing protein | - |
| E3S89_RS04345 (E3S89_04345) | - | 849251..850423 (+) | 1173 | WP_015978297.1 | BppU family phage baseplate upper protein | - |
| E3S89_RS04350 (E3S89_04350) | - | 850429..850824 (+) | 396 | WP_000398878.1 | hypothetical protein | - |
| E3S89_RS04355 (E3S89_04355) | - | 850880..851317 (+) | 438 | WP_000354128.1 | phage holin | - |
| E3S89_RS04360 (E3S89_04360) | - | 851298..852743 (+) | 1446 | WP_061641004.1 | SH3 domain-containing protein | - |
| E3S89_RS04365 (E3S89_04365) | - | 852992..853144 (+) | 153 | WP_078103528.1 | hypothetical protein | - |
| E3S89_RS04370 (E3S89_04370) | - | 853215..853325 (+) | 111 | WP_031922866.1 | hypothetical protein | - |
| E3S89_RS04375 (E3S89_04375) | - | 853327..853512 (+) | 186 | WP_001286804.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=416326 E3S89_RS04150 WP_029549393.1 821353..821823(+) (ssbA) [Staphylococcus aureus strain UP_818]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416326 E3S89_RS04150 WP_029549393.1 821353..821823(+) (ssbA) [Staphylococcus aureus strain UP_818]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGACTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGACTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |